Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s33.

Sample reads: 124,231. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4604.27 37064.19
2. MT-CO3 MT-CO3 4142.04 33343.26
3. MT-ND5 MT-ND5 3271.69 26336.97
4. EEF1A EEF1A 2295.37 18477.64
5. MT-CYB MT-CYB 2220.96 17878.64
6. MT-ND4 MT-ND4 1848.92 14883.73
7. MT-CO1 MT-CO1 1844.41 14847.43
8. gga-mir-3533 ENSGALG00000027736 1785.79 14375.54 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. gga-mir-3527 gga-mir-3527 1715.89 13812.85
10. ENSGALG00000018384 ENSGALG00000018384 1591.88 12814.57
11. MT-ND1 MT-ND1 1573.84 12669.35
12. MT-ND3 MT-ND3 1016.91 8186.08
13. GAPDH ENSGALG00000014442 915.44 7369.26 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. NME2 ENSGALG00000002932 886.13 7133.31 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MDK ENSGALG00000008367 748.59 6026.12 midkine [Source:NCBI gene;Acc:423196]
16. TMSB4X ENSGALG00000026383 622.32 5009.65 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. PPIA ENSGALG00000028600 615.56 4955.23 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
18. RPL5 ENSGALG00000005922 563.70 4537.76 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL8 ENSGALG00000016232 547.91 4410.65 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPS3 ENSGALG00000017330 538.89 4338.04 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL26 RPL26 498.31 4011.38
22. RPS23 ENSGALG00000015617 478.01 3847.96 ribosomal protein S23
23. CIRBP ENSGALG00000030918 457.72 3684.63 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. RPS7 ENSGALG00000016392 437.43 3521.29 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL15 ENSGALG00000011290 435.17 3503.10 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPL31 ENSGALG00000016775 435.17 3503.10 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
27. RPL27A ENSGALG00000005948 423.90 3412.38 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS6 ENSGALG00000015082 414.88 3339.77 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
29. RPL7A ENSGALG00000003197 410.37 3303.46 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPL7 ENSGALG00000035252 408.12 3285.35 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
31. MT-ND2 MT-ND2 405.86 3267.16
32. H3-IX H3-IX 390.08 3140.13
33. ATP6V0C ENSGALG00000009229 383.31 3085.63 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
34. EIF4G2 ENSGALG00000005587 363.02 2922.30 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
35. RPS10 ENSGALG00000002813 363.02 2922.30 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
36. RPS16 ENSGALG00000026490 356.26 2867.88 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
37. STMN1 ENSGALG00000001475 356.26 2867.88 stathmin 1 [Source:NCBI gene;Acc:396057]
38. RPL21 ENSGALG00000027035 354.00 2849.69 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. RPS20 ENSGALG00000014432 349.49 2813.38 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. ENO1 ENSGALG00000002377 347.24 2795.27 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
41. RPS27A ENSGALG00000036790 347.24 2795.27 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. RPL23 ENSGALG00000001634 344.98 2777.08 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
43. RPL27 ENSGALG00000002837 344.98 2777.08 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPS4 RPS4 335.96 2704.46
45. MEIS2 ENSGALG00000039118 333.71 2686.35 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
46. EEF1B2 ENSGALG00000008590 329.20 2650.05 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. RAN ENSGALG00000002569 320.18 2577.44 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
48. RPS24 ENSGALG00000004871 313.42 2523.02 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
49. RPS15A ENSGALG00000006771 311.16 2504.83 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. ENSGALG00000028992 ENSGALG00000028992 293.12 2359.60
51. SLC25A6_1 ENSGALG00000016691 293.12 2359.60 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
52. RPL32 ENSGALG00000027142 288.61 2323.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. RPS3A ENSGALG00000010077 286.36 2305.19 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
54. CRHOA CRHOA 279.59 2250.69
55. RPL23A ENSGALG00000003966 263.81 2123.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
56. RPSA 252.54 2032.94 ribosomal protein SA
57. LUM ENSGALG00000011271 250.28 2014.74 lumican [Source:NCBI gene;Acc:417891]
58. RPL14 ENSGALG00000043379 248.03 1996.63 ribosomal protein L14
59. TPT1 ENSGALG00000028872 248.03 1996.63 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
60. CALM CALM 243.52 1960.33
61. RPL4 ENSGALG00000007711 243.52 1960.33 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
62. RPL6 ENSGALG00000004818 243.52 1960.33 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPL36 ENSGALG00000000474 241.26 1942.13 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
64. RPS11 ENSGALG00000017299 239.01 1924.02 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
65. HMGN5 ENSGALG00000007131 232.24 1869.52 high mobility group nucleosome binding domain 5, transcript variant X1
66. RPL13 ENSGALG00000006179 232.24 1869.52 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
67. RPS14 ENSGALG00000004588 227.73 1833.22 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. gga-mir-3526 ENSGALG00000029121 227.73 1833.22 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
69. RPS29 ENSGALG00000012229 225.48 1815.10 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
70. ENSGALG00000018386 ENSGALG00000018386 223.22 1796.91
71. RPL18A 218.71 1760.61 ribosomal protein L18a
72. RPL10A ENSGALG00000002644 216.46 1742.49 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
73. SNRPG ENSGALG00000028409 216.46 1742.49 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
74. CNN3 ENSGALG00000005597 214.20 1724.30 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
75. TXN ENSGALG00000015704 214.20 1724.30 thioredoxin [Source:NCBI gene;Acc:396437]
76. RPS12 ENSGALG00000013990 209.70 1688.08 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
77. EIF1 ENSGALG00000028517 207.44 1669.88 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
78. PRDX1 ENSGALG00000010243 205.19 1651.77 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. RPS15 ENSGALG00000015195 205.19 1651.77 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
80. EIF4EBP1 ENSGALG00000003205 202.93 1633.58 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
81. RPL12 ENSGALG00000008806 196.17 1579.16 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
82. RPL3 ENSGALG00000012172 196.17 1579.16 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
83. YWHAZ ENSGALG00000031387 196.17 1579.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
84. BTF3L4 ENSGALG00000010570 193.91 1560.97 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
85. RPL9 ENSGALG00000000150 191.66 1542.86 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
86. ATP5G3 189.40 1524.66 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
87. RPLP1 ENSGALG00000030878 187.15 1506.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
88. HMGB1 ENSGALG00000042875 182.64 1470.24 high mobility group box 1 [Source:NCBI gene;Acc:395724]
89. ALDH1A2 ENSGALG00000004270 175.87 1415.75 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
90. LDHB ENSGALG00000035836 175.87 1415.75 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
91. ENSGALG00000002696 ENSGALG00000002696 171.36 1379.44
92. RPS8 ENSGALG00000010124 171.36 1379.44 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
93. EIF3F ENSGALG00000005326 169.11 1361.33 eukaryotic translation initiation factor 3 subunit F
94. UQCRFS1 ENSGALG00000025819 169.11 1361.33 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:NCBI gene;Acc:415752]
95. TCEB3 ENSGALG00000034625 164.60 1325.02 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
96. ANP32B ENSGALG00000037483 162.34 1306.83 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
97. HNRNPDL ENSGALG00000023199 162.34 1306.83 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
98. RPL36AL ENSGALG00000004952 162.34 1306.83 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
99. RPL38 ENSGALG00000001465 162.34 1306.83 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
100. TCF12 ENSGALG00000004304 160.09 1288.72 transcription factor 12 [Source:NCBI gene;Acc:396334]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA