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Experiment Chicken_E3_anterior_slice_2, section s29.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5078.83 40885.47
2. MT-ND5 MT-ND5 3961.12 31887.71
3. MT-CO3 MT-CO3 3896.63 31368.55
4. MT-ND1 MT-ND1 2352.11 18934.90
5. MT-CYB MT-CYB 2312.19 18613.53
6. EEF1A EEF1A 2100.31 16907.86
7. gga-mir-3533 ENSGALG00000027736 1802.46 14510.12 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-ND4 MT-ND4 1790.18 14411.26
9. gga-mir-3527 gga-mir-3527 1756.40 14139.33
10. MT-CO1 MT-CO1 1630.51 13125.89
11. MT-ND3 MT-ND3 1157.63 9319.12
12. GAPDH ENSGALG00000014442 1040.94 8379.75 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. ENSGALG00000018384 ENSGALG00000018384 893.55 7193.23
14. TMSB4X ENSGALG00000026383 872.06 7020.24 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
15. PPIA ENSGALG00000028600 826.00 6649.44 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. NME2 ENSGALG00000002932 819.86 6600.02 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. RPL5 ENSGALG00000005922 730.81 5883.15 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. MDK ENSGALG00000008367 706.25 5685.44 midkine [Source:NCBI gene;Acc:423196]
19. RPL8 ENSGALG00000016232 555.78 4474.13 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL26 RPL26 525.08 4226.99
21. RPL15 ENSGALG00000011290 518.94 4177.56 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS3 ENSGALG00000017330 518.94 4177.56 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. RPL27A ENSGALG00000005948 509.73 4103.42 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. MT-ND2 MT-ND2 506.65 4078.62
25. RPL7 ENSGALG00000035252 491.30 3955.05 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPS4 RPS4 469.81 3782.05
27. ENSGALG00000018386 ENSGALG00000018386 432.96 3485.40
28. H3-IX H3-IX 423.75 3411.26
29. RPS27A ENSGALG00000036790 411.46 3312.33 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
30. RPS23 ENSGALG00000015617 402.25 3238.18 ribosomal protein S23
31. CIRBP ENSGALG00000030918 396.11 3188.75 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. RPL21 ENSGALG00000027035 389.97 3139.33 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. RPS6 ENSGALG00000015082 386.90 3114.61 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. RPS7 ENSGALG00000016392 383.83 3089.90 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
35. ATP6V0C ENSGALG00000009229 374.62 3015.76 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. RPL23 ENSGALG00000001634 374.62 3015.76 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
37. RPS10 ENSGALG00000002813 362.33 2916.82 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. EIF4G2 ENSGALG00000005587 356.19 2867.39 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
39. RPL31 ENSGALG00000016775 353.12 2842.68 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. RPL7A ENSGALG00000003197 353.12 2842.68 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
41. SLC25A6_1 ENSGALG00000016691 340.84 2743.82 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
42. STMN1 ENSGALG00000001475 340.84 2743.82 stathmin 1 [Source:NCBI gene;Acc:396057]
43. RPS20 ENSGALG00000014432 337.77 2719.11 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. RPS16 ENSGALG00000026490 331.63 2669.68 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. RPSA 331.63 2669.68 ribosomal protein SA
46. EEF1B2 ENSGALG00000008590 325.49 2620.25 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. MEIS2 ENSGALG00000039118 310.13 2496.60 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
48. RPL27 ENSGALG00000002837 300.92 2422.46 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPS15A ENSGALG00000006771 300.92 2422.46 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. ENO1 ENSGALG00000002377 294.78 2373.03 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
51. RPS11 ENSGALG00000017299 288.64 2323.60 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
52. RPS12 ENSGALG00000013990 282.50 2274.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. RPL14 ENSGALG00000043379 279.43 2249.46 ribosomal protein L14
54. RPL6 ENSGALG00000004818 279.43 2249.46 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
55. RPS3A ENSGALG00000010077 276.36 2224.75 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. LUM ENSGALG00000011271 267.15 2150.60 lumican [Source:NCBI gene;Acc:417891]
57. RPL18A 267.15 2150.60 ribosomal protein L18a
58. RPL32 ENSGALG00000027142 264.07 2125.81 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPS24 ENSGALG00000004871 264.07 2125.81 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
60. SNRPG ENSGALG00000028409 248.72 2002.24 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
61. RPLP1 ENSGALG00000030878 242.58 1952.81 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. RAN ENSGALG00000002569 239.51 1928.10 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
63. TPT1 ENSGALG00000028872 239.51 1928.10 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
64. RPL3 ENSGALG00000012172 236.44 1903.38 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
65. RPS14 ENSGALG00000004588 236.44 1903.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. ATP5G3 233.37 1878.67 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. HMGN5 ENSGALG00000007131 233.37 1878.67 high mobility group nucleosome binding domain 5, transcript variant X1
68. RPL13 ENSGALG00000006179 233.37 1878.67 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
69. ENSGALG00000028992 ENSGALG00000028992 230.30 1853.96
70. RPL36 ENSGALG00000000474 230.30 1853.96 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
71. RPL4 ENSGALG00000007711 224.16 1804.53 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
72. RPL23A ENSGALG00000003966 221.09 1779.81 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
73. RPS29 ENSGALG00000012229 221.09 1779.81 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
74. RPL12 ENSGALG00000008806 218.02 1755.10 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
75. RPLP2 ENSGALG00000034811 214.94 1730.30 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
76. PRDX1 ENSGALG00000010243 211.87 1705.59 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
77. RPS8 ENSGALG00000010124 211.87 1705.59 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
78. RPL10A ENSGALG00000002644 208.80 1680.88 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. CRHOA CRHOA 205.73 1656.16
80. EIF1 ENSGALG00000028517 205.73 1656.16 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
81. RPS15 ENSGALG00000015195 205.73 1656.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
82. PNRC1 ENSGALG00000015780 202.66 1631.45 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
83. NONO ENSGALG00000005507 199.59 1606.73 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
84. TCEB3 ENSGALG00000034625 199.59 1606.73 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
85. NDUFB9 ENSGALG00000042242 196.52 1582.02 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
86. YWHAZ ENSGALG00000031387 187.31 1507.88 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
87. RPL38 ENSGALG00000001465 184.24 1483.16 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
88. EIF3F ENSGALG00000005326 181.17 1458.45 eukaryotic translation initiation factor 3 subunit F
89. HNRNPDL ENSGALG00000023199 181.17 1458.45 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
90. SNRPE ENSGALG00000000137 181.17 1458.45 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
91. TXN ENSGALG00000015704 175.03 1409.02 thioredoxin [Source:NCBI gene;Acc:396437]
92. ANP32B ENSGALG00000037483 171.96 1384.31 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
93. CALM CALM 171.96 1384.31
94. H2AFZ ENSGALG00000014023 168.88 1359.51 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
95. LDHB ENSGALG00000035836 168.88 1359.51 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
96. CHCHD2 ENSGALG00000002495 165.81 1334.80 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
97. RPL9 ENSGALG00000000150 165.81 1334.80 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
98. CNN3 ENSGALG00000005597 159.67 1285.37 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
99. CAPZA2 ENSGALG00000043437 153.53 1235.94 capping actin protein of muscle Z-line alpha subunit 2 [Source:NCBI gene;Acc:417771]
100. EIF4EBP1 ENSGALG00000003205 153.53 1235.94 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA