Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s24.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 6822.29 54910.08
2. MT-CO3 MT-CO3 3536.21 28461.64
3. MT-ND5 MT-ND5 2667.43 21469.15
4. MT-ATP6 MT-ATP6 2283.64 18380.17
5. EEF1A EEF1A 2106.07 16950.98
6. gga-mir-3533 ENSGALG00000027736 1833.03 14753.38 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. MT-CYB MT-CYB 1714.64 13800.50
8. MT-ND4 MT-ND4 1615.35 13001.35
9. gga-mir-3527 gga-mir-3527 1577.17 12694.06
10. MT-CO1 MT-CO1 1460.69 11756.55
11. GAPDH ENSGALG00000014442 1157.10 9313.07 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1151.37 9266.95
13. ENSGALG00000018386 ENSGALG00000018386 950.88 7653.28
14. MT-ND2 MT-ND2 950.88 7653.28
15. NME2 ENSGALG00000002932 929.88 7484.26 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. TMSB4X ENSGALG00000026383 771.40 6208.71 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. MT-ND3 MT-ND3 706.48 5686.20
18. PPIA ENSGALG00000028600 679.75 5471.06 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL5 ENSGALG00000005922 637.74 5132.93 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL8 ENSGALG00000016232 618.65 4979.28 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL26 RPL26 484.99 3903.50
22. RPL7A ENSGALG00000003197 483.08 3888.13 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPL7 ENSGALG00000035252 429.62 3457.85 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. RPS6 ENSGALG00000015082 420.07 3380.99 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
25. EIF4G2 ENSGALG00000005587 414.34 3334.87 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. CIRBP ENSGALG00000030918 406.70 3273.38 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. RPL27A ENSGALG00000005948 406.70 3273.38 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS4 RPS4 406.70 3273.38
29. STMN1 ENSGALG00000001475 404.79 3258.00 stathmin 1 [Source:NCBI gene;Acc:396057]
30. MDK ENSGALG00000008367 389.52 3135.10 midkine [Source:NCBI gene;Acc:423196]
31. RPS7 ENSGALG00000016392 383.79 3088.98 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. H3-IX H3-IX 381.88 3073.61
33. RPL15 ENSGALG00000011290 374.24 3012.12 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
34. RPS10 ENSGALG00000002813 372.33 2996.75 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
35. HMGN5 ENSGALG00000007131 357.06 2873.84 high mobility group nucleosome binding domain 5, transcript variant X1
36. RPL23 ENSGALG00000001634 347.51 2796.98 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
37. RPL21 ENSGALG00000027035 341.78 2750.86 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
38. EEF1B2 ENSGALG00000008590 324.60 2612.59 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
39. RPS20 ENSGALG00000014432 324.60 2612.59 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPS11 ENSGALG00000017299 322.69 2597.21 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPS15A ENSGALG00000006771 322.69 2597.21 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPS23 ENSGALG00000015617 316.96 2551.09 ribosomal protein S23
43. RPL27 ENSGALG00000002837 309.32 2489.60 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPSA 309.32 2489.60 ribosomal protein SA
45. RPS24 ENSGALG00000004871 305.50 2458.86 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
46. RAN ENSGALG00000002569 299.78 2412.82 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
47. ENSGALG00000028992 ENSGALG00000028992 297.87 2397.45
48. RPL31 ENSGALG00000016775 294.05 2366.70 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
49. RPS3A ENSGALG00000010077 294.05 2366.70 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
50. RPS27A ENSGALG00000036790 290.23 2335.95 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. ENO1 ENSGALG00000002377 286.41 2305.21 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
52. RPL32 ENSGALG00000027142 280.68 2259.09 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. RPL14 ENSGALG00000043379 274.95 2212.97 ribosomal protein L14
54. TPT1 ENSGALG00000028872 269.23 2166.93 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
55. RPS16 ENSGALG00000026490 252.04 2028.58 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPL18A 250.13 2013.20 ribosomal protein L18a
57. RPL13 ENSGALG00000006179 240.58 1936.34 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
58. RPS14 ENSGALG00000004588 238.68 1921.05 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. SLC25A6_1 ENSGALG00000016691 238.68 1921.05 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
60. LDHB ENSGALG00000035836 234.86 1890.30 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
61. RPLP1 ENSGALG00000030878 234.86 1890.30 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. HMGB1 ENSGALG00000042875 231.04 1859.56 high mobility group box 1 [Source:NCBI gene;Acc:395724]
63. RPL35A ENSGALG00000007611, ENSGALG00000041230 231.04 1859.56 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
64. SNRPG ENSGALG00000028409 231.04 1859.56 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
65. RPS29 ENSGALG00000012229 221.49 1782.69 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
66. H2AFZ ENSGALG00000014023 219.58 1767.32 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
67. HSPA8 ENSGALG00000006512 219.58 1767.32 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
68. RPS3 ENSGALG00000017330 219.58 1767.32 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
69. ATP6V0C ENSGALG00000009229 217.67 1751.95 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
70. EEF1D 217.67 1751.95 eukaryotic translation elongation factor 1 delta, transcript variant X13
71. EIF1 ENSGALG00000028517 217.67 1751.95 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
72. RPL6 ENSGALG00000004818 213.85 1721.20 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
73. RPS8 ENSGALG00000010124 213.85 1721.20 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
74. MEIS2 ENSGALG00000039118 211.94 1705.83 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
75. RPL3 ENSGALG00000012172 210.03 1690.45 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
76. RPS12 ENSGALG00000013990 210.03 1690.45 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
77. RPL9 ENSGALG00000000150 208.12 1675.08 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
78. RPL4 ENSGALG00000007711 206.22 1659.79 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
79. HNRNPDL ENSGALG00000023199 200.49 1613.67 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
80. ENSGALG00000002696 ENSGALG00000002696 196.67 1582.92
81. CDK1 ENSGALG00000003085 189.03 1521.43 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
82. CRHOA CRHOA 187.12 1506.06
83. RPS15 ENSGALG00000015195 187.12 1506.06 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
84. RPL23A ENSGALG00000003966 185.21 1490.69 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
85. RPL36 ENSGALG00000000474 181.39 1459.94 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
86. RPLP2 ENSGALG00000034811 181.39 1459.94 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
87. EIF4EBP1 ENSGALG00000003205 179.48 1444.57 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
88. FKBP4 ENSGALG00000014331 179.48 1444.57 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
89. NONO ENSGALG00000005507 179.48 1444.57 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
90. RPL38 ENSGALG00000001465 179.48 1444.57 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
91. BTF3L4 ENSGALG00000010570 177.57 1429.20 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
92. KPNA2 ENSGALG00000003584 177.57 1429.20 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
93. PRDX1 ENSGALG00000010243 177.57 1429.20 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
94. CNN3 ENSGALG00000005597 171.85 1383.16 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
95. YWHAZ ENSGALG00000031387 168.03 1352.41 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
96. ATP5G3 166.12 1337.04 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
97. ERH ENSGALG00000017384 162.30 1306.29 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
98. RBBP4 ENSGALG00000003522 156.57 1260.17 RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
99. RPL10A ENSGALG00000002644 156.57 1260.17 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
100. RPS21 ENSGALG00000005338 156.57 1260.17 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA