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Experiment Chicken_E3_anterior_slice_2, section s21.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3534.66 28449.95
2. MT-ATP6 MT-ATP6 2764.17 22248.39
3. EEF1A EEF1A 2504.85 20161.17
4. ENSGALG00000018384 ENSGALG00000018384 2390.92 19244.16
5. MT-ND5 MT-ND5 2278.49 18339.23
6. MT-CO1 MT-CO1 1791.32 14418.07
7. MT-CYB MT-CYB 1618.93 13030.53
8. gga-mir-3527 gga-mir-3527 1614.43 12994.31
9. MT-ND4 MT-ND4 1525.99 12282.47
10. gga-mir-3533 ENSGALG00000027736 1260.67 10146.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1232.19 9917.71 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1047.81 8433.67
13. MT-ND3 MT-ND3 974.36 7842.48
14. NME2 ENSGALG00000002932 974.36 7842.48 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 700.04 5634.52 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. TMSB4X ENSGALG00000026383 697.04 5610.37 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. RPL8 ENSGALG00000016232 689.54 5550.00 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. PPIA ENSGALG00000028600 656.57 5284.63 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPS3 ENSGALG00000017330 596.61 4802.03 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. RPL26 RPL26 586.11 4717.51
21. RPL7 ENSGALG00000035252 545.64 4391.78 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
22. RPS4 RPS4 476.69 3836.81
23. RPL7A ENSGALG00000003197 473.69 3812.66 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPS10 ENSGALG00000002813 460.20 3704.08 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
25. STMN1 ENSGALG00000001475 457.20 3679.93 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPL27A ENSGALG00000005948 455.70 3667.86 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. MDK ENSGALG00000008367 452.70 3643.72 midkine [Source:NCBI gene;Acc:423196]
28. RPS7 ENSGALG00000016392 452.70 3643.72 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPL15 ENSGALG00000011290 439.21 3535.14 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
30. RPS23 ENSGALG00000015617 428.72 3450.70 ribosomal protein S23
31. RPS6 ENSGALG00000015082 428.72 3450.70 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
32. RAN ENSGALG00000002569 424.22 3414.48 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
33. RPL27 ENSGALG00000002837 421.22 3390.34 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
34. MT-ND2 MT-ND2 412.23 3317.98
35. RPL23 ENSGALG00000001634 398.74 3209.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
36. RPS15A ENSGALG00000006771 397.24 3197.33 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
37. ENSGALG00000018386 ENSGALG00000018386 385.25 3100.82
38. RPSA 380.75 3064.60 ribosomal protein SA
39. RPS11 ENSGALG00000017299 379.25 3052.53 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. CIRBP ENSGALG00000030918 371.75 2992.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
41. EIF4G2 ENSGALG00000005587 367.26 2956.02 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
42. H3-IX H3-IX 362.76 2919.80
43. ENO1 ENSGALG00000002377 356.76 2871.51 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
44. RPS20 ENSGALG00000014432 352.27 2835.37 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
45. RPL31 ENSGALG00000016775 346.27 2787.08 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
46. HMGN5 ENSGALG00000007131 344.77 2775.00 high mobility group nucleosome binding domain 5, transcript variant X1
47. RPL21 ENSGALG00000027035 340.28 2738.86 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
48. RPL18A 338.78 2726.79 ribosomal protein L18a
49. RPS24 ENSGALG00000004871 328.28 2642.28 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
50. ENSGALG00000028992 ENSGALG00000028992 320.79 2581.99
51. RPS16 ENSGALG00000026490 316.29 2545.77 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPS27A ENSGALG00000036790 308.80 2485.49 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. RPL14 ENSGALG00000043379 305.80 2461.34 ribosomal protein L14
54. RPL6 ENSGALG00000004818 299.80 2413.05 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
55. RPS29 ENSGALG00000012229 295.30 2376.83 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
56. SLC25A6_1 ENSGALG00000016691 286.31 2304.47 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. RPL4 ENSGALG00000007711 281.81 2268.25 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
58. RPS3A ENSGALG00000010077 275.82 2220.03 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
59. RPL13 ENSGALG00000006179 272.82 2195.89 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
60. RPL35A ENSGALG00000007611, ENSGALG00000041230 272.82 2195.89 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
61. EEF1B2 ENSGALG00000008590 265.32 2135.52 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
62. RPS12 ENSGALG00000013990 265.32 2135.52 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
63. RPLP1 ENSGALG00000030878 263.83 2123.53 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
64. H2AFZ ENSGALG00000014023 260.83 2099.38 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
65. LDHB ENSGALG00000035836 260.83 2099.38 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
66. ATP5G3 251.83 2026.94 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. RPS14 ENSGALG00000004588 245.84 1978.73 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. RPL38 ENSGALG00000001465 244.34 1966.66 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
69. SNRPG ENSGALG00000028409 244.34 1966.66 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
70. RPL32 ENSGALG00000027142 241.34 1942.51 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
71. KPNA2 ENSGALG00000003584 239.84 1930.44 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
72. ATP6V0C ENSGALG00000009229 236.84 1906.29 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
73. RPL10A ENSGALG00000002644 217.36 1749.50 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. RPL23A ENSGALG00000003966 212.86 1713.28 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
75. FKBP4 ENSGALG00000014331 208.36 1677.06 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
76. BTF3L4 ENSGALG00000010570 200.87 1616.77 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
77. HNRNPDL ENSGALG00000023199 200.87 1616.77 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
78. MIF ENSGALG00000006326 197.87 1592.63 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
79. HSP90AB1 ENSGALG00000010175 196.37 1580.55 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
80. RPL36 ENSGALG00000000474 193.37 1556.41 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
81. RPLP2 ENSGALG00000034811 190.37 1532.26 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
82. CRHOA CRHOA 188.88 1520.27
83. HSPE1 ENSGALG00000009070 187.38 1508.19 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
84. RPS15 ENSGALG00000015195 187.38 1508.19 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
85. ERH ENSGALG00000017384 182.88 1471.97 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
86. HMGB1 ENSGALG00000042875 182.88 1471.97 high mobility group box 1 [Source:NCBI gene;Acc:395724]
87. RPL9 ENSGALG00000000150 182.88 1471.97 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
88. TCEB3 ENSGALG00000034625 182.88 1471.97 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
89. RPL3 ENSGALG00000012172 181.38 1459.90 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
90. YWHAZ ENSGALG00000031387 181.38 1459.90 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
91. CDK1 ENSGALG00000003085 176.88 1423.68 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
92. SNRPE ENSGALG00000000137 175.38 1411.61 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
93. NONO ENSGALG00000005507 173.89 1399.61 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
94. RPS21 ENSGALG00000005338 170.89 1375.47 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
95. TPT1 ENSGALG00000028872 169.39 1363.39 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
96. DDX5 ENSGALG00000003532 167.89 1351.32 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
97. EIF4EBP1 ENSGALG00000003205 167.89 1351.32 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
98. ENSGALG00000002696 ENSGALG00000002696 167.89 1351.32
99. HMGB2 ENSGALG00000010745 167.89 1351.32 high mobility group box 2 [Source:NCBI gene;Acc:396482]
100. PRDX1 ENSGALG00000010243 167.89 1351.32 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA