Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s20.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 8362.34 67308.33
2. MT-CO3 MT-CO3 3191.87 25691.30
3. MT-ND5 MT-ND5 2370.33 19078.74
4. MT-ATP6 MT-ATP6 1997.64 16078.97
5. EEF1A EEF1A 1854.37 14925.79
6. gga-mir-3527 gga-mir-3527 1527.93 12298.28
7. MT-CO1 MT-CO1 1513.42 12181.49
8. MT-CYB MT-CYB 1378.31 11093.99
9. MT-ND4 MT-ND4 1290.35 10386.00
10. gga-mir-3533 ENSGALG00000027736 1262.24 10159.75 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. ENSGALG00000018386 ENSGALG00000018386 1200.58 9663.45
12. GAPDH ENSGALG00000014442 1049.15 8444.59 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND1 MT-ND1 1047.33 8429.94
14. MT-ND2 MT-ND2 836.05 6729.35
15. RPL5 ENSGALG00000005922 756.26 6087.12 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. NME2 ENSGALG00000002932 734.49 5911.90 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. MT-ND3 MT-ND3 712.73 5736.75
18. PPIA ENSGALG00000028600 707.29 5692.96 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL8 ENSGALG00000016232 581.25 4678.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. TMSB4X ENSGALG00000026383 527.75 4247.85 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPL26 RPL26 457.92 3685.79
22. RPL7A ENSGALG00000003197 420.75 3386.61 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. CIRBP ENSGALG00000030918 408.05 3284.39 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. RPL7 ENSGALG00000035252 406.24 3269.82 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. RPL15 ENSGALG00000011290 395.36 3182.25 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPS20 ENSGALG00000014432 388.10 3123.81 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
27. RPL27A ENSGALG00000005948 381.76 3072.78 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. HMGN5 ENSGALG00000007131 379.03 3050.81 high mobility group nucleosome binding domain 5, transcript variant X1
29. RPS10 ENSGALG00000002813 377.22 3036.24 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
30. RPS23 ENSGALG00000015617 376.31 3028.91 ribosomal protein S23
31. RPS7 ENSGALG00000016392 374.50 3014.34 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. RPL21 ENSGALG00000027035 369.97 2977.88 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. EIF4G2 ENSGALG00000005587 369.06 2970.56 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
34. STMN1 ENSGALG00000001475 366.34 2948.66 stathmin 1 [Source:NCBI gene;Acc:396057]
35. RPS4 RPS4 363.62 2926.77
36. RPS6 ENSGALG00000015082 356.37 2868.42 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. MDK ENSGALG00000008367 340.95 2744.30 midkine [Source:NCBI gene;Acc:423196]
38. H3-IX H3-IX 330.07 2656.73
39. RPS11 ENSGALG00000017299 325.53 2620.19 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. RPSA 324.63 2612.94 ribosomal protein SA
41. ENO1 ENSGALG00000002377 321.91 2591.05 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
42. RAN ENSGALG00000002569 321.91 2591.05 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
43. RPS15A ENSGALG00000006771 317.37 2554.51 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. RPL14 ENSGALG00000043379 307.40 2474.26 ribosomal protein L14
45. RPS3 ENSGALG00000017330 294.70 2372.04 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
46. RPL18A 288.36 2321.00 ribosomal protein L18a
47. RPL23 ENSGALG00000001634 288.36 2321.00 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
48. RPL4 ENSGALG00000007711 287.45 2313.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
49. RPL27 ENSGALG00000002837 282.92 2277.22 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPL31 ENSGALG00000016775 277.48 2233.43 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
51. RPL6 ENSGALG00000004818 267.50 2153.10 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
52. RPS3A ENSGALG00000010077 265.69 2138.53 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
53. RPS16 ENSGALG00000026490 264.78 2131.21 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. RPL32 ENSGALG00000027142 259.34 2087.42 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. EEF1B2 ENSGALG00000008590 255.71 2058.21 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
56. RPS24 ENSGALG00000004871 255.71 2058.21 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
57. RPLP1 ENSGALG00000030878 254.81 2050.96 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
58. CRHOA CRHOA 250.27 2014.42
59. SLC25A6_1 ENSGALG00000016691 248.46 1999.85 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
60. ENSGALG00000028992 ENSGALG00000028992 244.83 1970.63
61. H2AFZ ENSGALG00000014023 241.20 1941.41 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
62. RPL13 ENSGALG00000006179 234.86 1890.38 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
63. ATP6V0C ENSGALG00000009229 233.04 1875.73 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
64. RPS14 ENSGALG00000004588 231.23 1861.17 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPS27A ENSGALG00000036790 230.32 1853.84 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
66. RPS29 ENSGALG00000012229 228.51 1839.27 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
67. RPS15 ENSGALG00000015195 221.25 1780.84 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
68. HNRNPDL ENSGALG00000023199 214.00 1722.48 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
69. EEF1D 212.19 1707.91 eukaryotic translation elongation factor 1 delta, transcript variant X13
70. RPS12 ENSGALG00000013990 211.28 1700.59 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
71. ENSGALG00000002696 ENSGALG00000002696 201.31 1620.34
72. TPT1 ENSGALG00000028872 201.31 1620.34 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
73. RPL10A ENSGALG00000002644 200.40 1613.02 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. ATP5G3 198.59 1598.45 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
75. LDHB ENSGALG00000035836 198.59 1598.45 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. RPS8 ENSGALG00000010124 198.59 1598.45 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
77. RPL35A ENSGALG00000007611, ENSGALG00000041230 194.96 1569.23 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
78. PRDX1 ENSGALG00000010243 189.52 1525.44 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. RPL23A ENSGALG00000003966 189.52 1525.44 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
80. HSPA8 ENSGALG00000006512 186.80 1503.55 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
81. FKBP4 ENSGALG00000014331 177.73 1430.55 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
82. SNRPG ENSGALG00000028409 177.73 1430.55 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
83. BTF3L4 ENSGALG00000010570 175.92 1415.98 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
84. CDK1 ENSGALG00000003085 173.20 1394.08 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
85. KPNA2 ENSGALG00000003584 173.20 1394.08 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
86. RPLP2 ENSGALG00000034811 171.38 1379.43 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
87. NUCKS1 ENSGALG00000000708 170.48 1372.19 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
88. ANP32B ENSGALG00000037483 169.57 1364.87 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
89. RPL38 ENSGALG00000001465 169.57 1364.87 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
90. RPS2 ENSGALG00000005490 166.85 1342.97 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
91. DDX5 ENSGALG00000003532 161.41 1299.19 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
92. HMGB1 ENSGALG00000042875 160.50 1291.86 high mobility group box 1 [Source:NCBI gene;Acc:395724]
93. MEIS2 ENSGALG00000039118 160.50 1291.86 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
94. MIF ENSGALG00000006326 160.50 1291.86 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
95. EIF1 ENSGALG00000028517 158.69 1277.29 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
96. CALM CALM 156.87 1262.64
97. EIF5A2 ENSGALG00000009309 155.06 1248.08 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
98. ERH ENSGALG00000017384 154.15 1240.75 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
99. RPL12 ENSGALG00000008806 153.25 1233.51 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
100. TCEB3 ENSGALG00000034625 151.43 1218.86 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA