Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s19.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3134.84 25233.40
2. MT-ATP6 MT-ATP6 2097.15 16880.68
3. MT-ND5 MT-ND5 2075.37 16705.36
4. EEF1A EEF1A 2067.45 16641.61
5. gga-mir-3527 gga-mir-3527 1742.68 14027.43
6. MT-CYB MT-CYB 1718.91 13836.09
7. MT-ND4 MT-ND4 1564.45 12592.79
8. MT-CO1 MT-CO1 1437.71 11572.62
9. ENSGALG00000018384 ENSGALG00000018384 1233.74 9930.79
10. gga-mir-3533 ENSGALG00000027736 1122.84 9038.12 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 1103.03 8878.67
12. GAPDH ENSGALG00000014442 1079.27 8687.41 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND3 MT-ND3 847.57 6822.38
14. NME2 ENSGALG00000002932 689.15 5547.20 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. PPIA ENSGALG00000028600 687.17 5531.27 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPL5 ENSGALG00000005922 665.39 5355.95 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. ENSGALG00000018386 ENSGALG00000018386 649.54 5228.37
18. RPL8 ENSGALG00000016232 633.70 5100.87 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. TMSB4X ENSGALG00000026383 592.11 4766.10 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPL26 RPL26 528.74 4256.01
21. MT-ND2 MT-ND2 493.10 3969.13
22. RPL15 ENSGALG00000011290 487.16 3921.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPS3 ENSGALG00000017330 485.18 3905.38 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. RPL27A ENSGALG00000005948 463.39 3729.98 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. CIRBP ENSGALG00000030918 443.59 3570.61 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. H3-IX H3-IX 407.94 3283.65
27. MDK ENSGALG00000008367 405.96 3267.71 midkine [Source:NCBI gene;Acc:423196]
28. RPS10 ENSGALG00000002813 403.98 3251.77 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. RPL7 ENSGALG00000035252 400.02 3219.90 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. RPS7 ENSGALG00000016392 400.02 3219.90 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
31. RPL31 ENSGALG00000016775 396.06 3188.02 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
32. RPS6 ENSGALG00000015082 396.06 3188.02 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
33. RPS23 ENSGALG00000015617 394.08 3172.08 ribosomal protein S23
34. RPL7A ENSGALG00000003197 392.10 3156.15 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. EIF4G2 ENSGALG00000005587 390.12 3140.21 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
36. HMGN5 ENSGALG00000007131 386.16 3108.33 high mobility group nucleosome binding domain 5, transcript variant X1
37. RPL21 ENSGALG00000027035 382.20 3076.46 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
38. RPS15A ENSGALG00000006771 378.24 3044.58 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
39. RPS4 RPS4 372.30 2996.77
40. RPS20 ENSGALG00000014432 366.36 2948.96 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. STMN1 ENSGALG00000001475 358.44 2885.21 stathmin 1 [Source:NCBI gene;Acc:396057]
42. RPL18A 356.46 2869.27 ribosomal protein L18a
43. RAN ENSGALG00000002569 350.52 2821.46 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
44. ENO1 ENSGALG00000002377 338.63 2725.75 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
45. RPL27 ENSGALG00000002837 330.71 2662.00 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
46. RPS24 ENSGALG00000004871 320.81 2582.31 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
47. ENSGALG00000028992 ENSGALG00000028992 316.85 2550.43
48. RPS11 ENSGALG00000017299 316.85 2550.43 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPL14 ENSGALG00000043379 310.91 2502.62 ribosomal protein L14
50. RPL32 ENSGALG00000027142 306.95 2470.75 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. RPSA 301.01 2422.93 ribosomal protein SA
52. SLC25A6_1 ENSGALG00000016691 295.07 2375.12 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
53. EEF1B2 ENSGALG00000008590 293.09 2359.18 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. RPL6 ENSGALG00000004818 283.18 2279.41 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
55. RPS16 ENSGALG00000026490 277.24 2231.60 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. LDHB ENSGALG00000035836 271.30 2183.79 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
57. RPS12 ENSGALG00000013990 271.30 2183.79 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
58. RPS27A ENSGALG00000036790 255.46 2056.28 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. RPS29 ENSGALG00000012229 253.48 2040.35 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
60. RPL23 ENSGALG00000001634 249.52 2008.47 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
61. RPLP1 ENSGALG00000030878 243.58 1960.66 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. CRHOA CRHOA 239.62 1928.78
63. RPL35A ENSGALG00000007611, ENSGALG00000041230 235.66 1896.91 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
64. RPS3A ENSGALG00000010077 235.66 1896.91 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
65. RPL10A ENSGALG00000002644 233.68 1880.97 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
66. RPL4 ENSGALG00000007711 227.74 1833.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
67. RPS15 ENSGALG00000015195 227.74 1833.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
68. H2AFZ ENSGALG00000014023 223.78 1801.28 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
69. ENSGALG00000002696 ENSGALG00000002696 217.83 1753.39
70. RPL13 ENSGALG00000006179 217.83 1753.39 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
71. HMGB1 ENSGALG00000042875 211.89 1705.58 high mobility group box 1 [Source:NCBI gene;Acc:395724]
72. RPL23A ENSGALG00000003966 207.93 1673.70 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
73. HNRNPDL ENSGALG00000023199 205.95 1657.76 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
74. RPS14 ENSGALG00000004588 203.97 1641.82 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
75. CDK1 ENSGALG00000003085 200.01 1609.95 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
76. RPL38 ENSGALG00000001465 200.01 1609.95 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
77. RPS8 ENSGALG00000010124 200.01 1609.95 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
78. KPNA2 ENSGALG00000003584 198.03 1594.01 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
79. HSPA8 ENSGALG00000006512 192.09 1546.20 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
80. PRDX1 ENSGALG00000010243 192.09 1546.20 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
81. RPL36 ENSGALG00000000474 192.09 1546.20 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
82. ATP6V0C ENSGALG00000009229 190.11 1530.26 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
83. FKBP4 ENSGALG00000014331 190.11 1530.26 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
84. MIF ENSGALG00000006326 188.13 1514.32 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
85. TPT1 ENSGALG00000028872 186.15 1498.38 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
86. RPL3 ENSGALG00000012172 184.17 1482.45 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
87. ATP5G3 180.21 1450.57 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. SNRPG ENSGALG00000028409 180.21 1450.57 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
89. LUM ENSGALG00000011271 178.23 1434.63 lumican [Source:NCBI gene;Acc:417891]
90. TCEB3 ENSGALG00000034625 176.25 1418.70 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
91. EIF5A2 ENSGALG00000009309 174.27 1402.76 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
92. CALM CALM 168.33 1354.95
93. ANP32B ENSGALG00000037483 164.37 1323.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
94. RPLP2 ENSGALG00000034811 162.39 1307.13 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
95. RPL12 ENSGALG00000008806 160.41 1291.19 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
96. MEIS2 ENSGALG00000039118 158.43 1275.26 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
97. IGF2BP3 ENSGALG00000010961 156.44 1259.24 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
98. HSPE1 ENSGALG00000009070 154.46 1243.30 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
99. RPL9 ENSGALG00000000150 152.48 1227.36 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
100. TCF12 ENSGALG00000004304 152.48 1227.36 transcription factor 12 [Source:NCBI gene;Acc:396334]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA