Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s18.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4112.36 33101.74
2. ENSGALG00000018384 ENSGALG00000018384 2289.62 18429.91
3. EEF1A EEF1A 2253.44 18138.68
4. MT-ATP6 MT-ATP6 1948.51 15684.20
5. MT-CO1 MT-CO1 1702.14 13701.09
6. gga-mir-3527 gga-mir-3527 1647.01 13257.33
7. MT-CYB MT-CYB 1522.97 12258.89
8. MT-ND4 MT-ND4 1512.63 12175.66
9. gga-mir-3533 ENSGALG00000027736 1271.44 10234.24 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. GAPDH ENSGALG00000014442 1231.81 9915.25 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND5 MT-ND5 1218.03 9804.33
12. MT-ND3 MT-ND3 1040.58 8375.97
13. MT-ND1 MT-ND1 1000.96 8057.06
14. RPL5 ENSGALG00000005922 857.96 6906.00 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. NME2 ENSGALG00000002932 727.03 5852.10 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL8 ENSGALG00000016232 661.56 5325.11 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. ENSGALG00000018386 ENSGALG00000018386 584.03 4701.05
18. RPL26 RPL26 584.03 4701.05
19. PPIA ENSGALG00000028600 582.31 4687.21 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RPS3 ENSGALG00000017330 566.81 4562.44 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. TMSB4X ENSGALG00000026383 542.69 4368.29 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. RPL27A ENSGALG00000005948 527.18 4243.45 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPS6 ENSGALG00000015082 511.68 4118.68 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
24. RPS7 ENSGALG00000016392 506.51 4077.07 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL7A ENSGALG00000003197 501.34 4035.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPSA 496.17 3993.84 ribosomal protein SA
27. RPL15 ENSGALG00000011290 477.22 3841.30 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. RPL7 ENSGALG00000035252 459.99 3702.61 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. MT-ND2 MT-ND2 451.38 3633.31
30. RPS10 ENSGALG00000002813 449.66 3619.46 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. RPS4 RPS4 449.66 3619.46
32. RPL21 ENSGALG00000027035 435.87 3508.46 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. RPL23 ENSGALG00000001634 435.87 3508.46 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. RPL27 ENSGALG00000002837 434.15 3494.62 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. STMN1 ENSGALG00000001475 418.64 3369.77 stathmin 1 [Source:NCBI gene;Acc:396057]
36. RPS23 ENSGALG00000015617 408.31 3286.62 ribosomal protein S23
37. EIF4G2 ENSGALG00000005587 406.58 3272.70 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
38. HMGN5 ENSGALG00000007131 403.14 3245.01 high mobility group nucleosome binding domain 5, transcript variant X1
39. CIRBP ENSGALG00000030918 401.42 3231.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
40. RPS20 ENSGALG00000014432 399.69 3217.24 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. RAN ENSGALG00000002569 387.63 3120.16 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
42. RPS15A ENSGALG00000006771 382.47 3078.63 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. ENO1 ENSGALG00000002377 372.13 2995.40 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
44. RPS11 ENSGALG00000017299 360.07 2898.32 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
45. ENSGALG00000028992 ENSGALG00000028992 344.56 2773.48
46. MDK ENSGALG00000008367 334.23 2690.33 midkine [Source:NCBI gene;Acc:423196]
47. RPL31 ENSGALG00000016775 330.78 2662.56 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
48. RPL6 ENSGALG00000004818 329.06 2648.71 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
49. RPS16 ENSGALG00000026490 325.61 2620.94 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. RPS3A ENSGALG00000010077 325.61 2620.94 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. RPS29 ENSGALG00000012229 323.89 2607.10 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
52. RPS24 ENSGALG00000004871 313.55 2523.87 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
53. ENSGALG00000002696 ENSGALG00000002696 308.38 2482.25
54. RPL14 ENSGALG00000043379 306.66 2468.41 ribosomal protein L14
55. RPL32 ENSGALG00000027142 306.66 2468.41 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. RPL18A 303.22 2440.72 ribosomal protein L18a
57. H2AFZ ENSGALG00000014023 301.49 2426.79 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
58. H3-IX H3-IX 298.05 2399.10
59. RPL35A ENSGALG00000007611, ENSGALG00000041230 296.32 2385.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
60. EEF1B2 ENSGALG00000008590 294.60 2371.33 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
61. SLC25A6_1 ENSGALG00000016691 291.16 2343.64 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
62. RPLP1 ENSGALG00000030878 279.10 2246.57 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
63. CRHOA CRHOA 277.37 2232.64
64. SNRPG ENSGALG00000028409 275.65 2218.80 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
65. RPL13 ENSGALG00000006179 272.21 2191.11 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
66. RPL4 ENSGALG00000007711 268.76 2163.34 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
67. RPS15 ENSGALG00000015195 267.04 2149.49 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
68. RPL23A ENSGALG00000003966 263.59 2121.72 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
69. RPS27A ENSGALG00000036790 261.87 2107.88 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
70. LDHB ENSGALG00000035836 254.98 2052.42 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
71. RPS12 ENSGALG00000013990 251.53 2024.65 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
72. HMGB1 ENSGALG00000042875 246.36 1983.03 high mobility group box 1 [Source:NCBI gene;Acc:395724]
73. RPL36AL ENSGALG00000004952 246.36 1983.03 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
74. RPL10A ENSGALG00000002644 234.30 1885.96 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPS14 ENSGALG00000004588 230.86 1858.27 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. HNRNPDL ENSGALG00000023199 225.69 1816.65 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
77. RPS8 ENSGALG00000010124 223.97 1802.81 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
78. RPL38 ENSGALG00000001465 220.52 1775.04 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
79. ATP5G3 218.80 1761.19 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
80. BTF3L4 ENSGALG00000010570 217.07 1747.27 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
81. KPNA2 ENSGALG00000003584 217.07 1747.27 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
82. RPL36 ENSGALG00000000474 213.63 1719.58 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
83. HSPA8 ENSGALG00000006512 208.46 1677.96 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
84. RPL24 ENSGALG00000015339 208.46 1677.96 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
85. RPS21 ENSGALG00000005338 205.02 1650.27 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
86. CDK1 ENSGALG00000003085 203.29 1636.35 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
87. MIF ENSGALG00000006326 203.29 1636.35 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
88. ATP6V0C ENSGALG00000009229 201.57 1622.50 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
89. TPT1 ENSGALG00000028872 199.85 1608.66 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
90. RPL9 ENSGALG00000000150 198.12 1594.73 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
91. PRDX1 ENSGALG00000010243 196.40 1580.89 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. CALM CALM 192.96 1553.20
93. ERH ENSGALG00000017384 192.96 1553.20 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
94. RPLP2 ENSGALG00000034811 191.23 1539.27 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
95. TCEB3 ENSGALG00000034625 189.51 1525.43 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
96. RPL3 ENSGALG00000012172 180.90 1456.12 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
97. LUM ENSGALG00000011271 179.17 1442.20 lumican [Source:NCBI gene;Acc:417891]
98. HSPE1 ENSGALG00000009070 174.00 1400.58 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
99. NDUFB9 ENSGALG00000042242 167.11 1345.12 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
100. CALM_1 CALM_1 165.39 1331.28
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA