Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s16.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 5112.75 41155.16
2. MT-CO3 MT-CO3 3276.65 26375.44
3. EEF1A EEF1A 2374.34 19112.29
4. MT-ATP6 MT-ATP6 2011.39 16190.71
5. MT-ND5 MT-ND5 2004.65 16136.46
6. gga-mir-3527 gga-mir-3527 1736.09 13974.68
7. MT-CO1 MT-CO1 1587.76 12780.70
8. GAPDH ENSGALG00000014442 1492.25 12011.89 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND4 MT-ND4 1415.84 11396.83
10. MT-CYB MT-CYB 1266.39 10193.83
11. MT-ND3 MT-ND3 1088.85 8764.71
12. MT-ND1 MT-ND1 987.72 7950.67
13. gga-mir-3533 ENSGALG00000027736 986.59 7941.57 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. ENSGALG00000018386 ENSGALG00000018386 950.63 7652.11
15. NME2 ENSGALG00000002932 888.83 7154.65 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. MT-ND2 MT-ND2 769.72 6195.87
17. RPL8 ENSGALG00000016232 746.12 6005.90 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. PPIA ENSGALG00000028600 653.98 5264.22 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL26 RPL26 610.16 4911.49
20. RPS3 ENSGALG00000017330 604.54 4866.25 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL5 ENSGALG00000005922 585.44 4712.51 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
22. RPL7A ENSGALG00000003197 523.64 4215.05 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPL7 ENSGALG00000035252 500.04 4025.08 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. RPS10 ENSGALG00000002813 475.32 3826.10 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
25. RPL27A ENSGALG00000005948 473.07 3807.98 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL15 ENSGALG00000011290 455.09 3663.25 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPS6 ENSGALG00000015082 449.47 3618.02 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
28. RPS4 RPS4 424.75 3419.03
29. TMSB4X ENSGALG00000026383 419.13 3373.79 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. RPS20 ENSGALG00000014432 414.64 3337.65 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
31. RPL27 ENSGALG00000002837 411.27 3310.52 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
32. ENO1 ENSGALG00000002377 409.02 3292.41 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
33. RPS7 ENSGALG00000016392 398.91 3211.03 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
34. RPL21 ENSGALG00000027035 392.16 3156.70 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
35. CIRBP ENSGALG00000030918 391.04 3147.68 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. RPL23 ENSGALG00000001634 391.04 3147.68 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
37. RPSA 382.05 3075.32 ribosomal protein SA
38. HMGN5 ENSGALG00000007131 380.93 3066.30 high mobility group nucleosome binding domain 5, transcript variant X1
39. RPS23 ENSGALG00000015617 380.93 3066.30 ribosomal protein S23
40. RPS11 ENSGALG00000017299 358.45 2885.35 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. H3-IX H3-IX 356.21 2867.32
42. RPL31 ENSGALG00000016775 355.08 2858.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. MDK ENSGALG00000008367 349.46 2812.98 midkine [Source:NCBI gene;Acc:423196]
44. RAN ENSGALG00000002569 343.85 2767.83 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPL14 ENSGALG00000043379 339.35 2731.60 ribosomal protein L14
46. STMN1 ENSGALG00000001475 337.10 2713.49 stathmin 1 [Source:NCBI gene;Acc:396057]
47. EIF4G2 ENSGALG00000005587 323.62 2604.98 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
48. RPL4 ENSGALG00000007711 318.00 2559.75 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
49. RPL18A 314.63 2532.62 ribosomal protein L18a
50. RPS3A ENSGALG00000010077 314.63 2532.62 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. RPS27A ENSGALG00000036790 300.02 2415.02 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. ENSGALG00000028992 ENSGALG00000028992 298.90 2406.00
53. SLC25A6_1 ENSGALG00000016691 298.90 2406.00 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. RPS12 ENSGALG00000013990 293.28 2360.76 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
55. RPS24 ENSGALG00000004871 283.17 2279.38 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
56. RPLP1 ENSGALG00000030878 280.92 2261.27 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
57. RPS15A ENSGALG00000006771 279.80 2252.25 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
58. RPS16 ENSGALG00000026490 278.67 2243.16 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
59. H2AFZ ENSGALG00000014023 271.93 2188.90 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
60. RPS29 ENSGALG00000012229 271.93 2188.90 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
61. EEF1B2 ENSGALG00000008590 268.56 2161.78 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
62. RPL13 ENSGALG00000006179 268.56 2161.78 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
63. RPL32 ENSGALG00000027142 267.44 2152.76 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
64. RPS14 ENSGALG00000004588 256.20 2062.29 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPL10A ENSGALG00000002644 253.95 2044.17 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
66. RPL23A ENSGALG00000003966 247.21 1989.92 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
67. SNRPG ENSGALG00000028409 240.47 1935.67 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
68. RPL6 ENSGALG00000004818 234.85 1890.43 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. HNRNPDL ENSGALG00000023199 230.35 1854.21 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
70. MIF ENSGALG00000006326 230.35 1854.21 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
71. ENSGALG00000002696 ENSGALG00000002696 229.23 1845.19
72. HSPA8 ENSGALG00000006512 224.74 1809.05 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
73. RPL35A ENSGALG00000007611, ENSGALG00000041230 219.12 1763.81 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
74. ATP6V0C ENSGALG00000009229 216.87 1745.70 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
75. RPL36 ENSGALG00000000474 212.38 1709.56 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
76. RPL38 ENSGALG00000001465 212.38 1709.56 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
77. CRHOA CRHOA 205.63 1655.22
78. HSP90AB1 ENSGALG00000010175 202.26 1628.09 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
79. TCEB3 ENSGALG00000034625 202.26 1628.09 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
80. BTF3L4 ENSGALG00000010570 200.02 1610.06 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
81. RPL9 ENSGALG00000000150 198.89 1600.97 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
82. FKBP4 ENSGALG00000014331 197.77 1591.95 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
83. ERH ENSGALG00000017384 196.64 1582.86 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
84. HMGB1 ENSGALG00000042875 194.40 1564.83 high mobility group box 1 [Source:NCBI gene;Acc:395724]
85. KPNA2 ENSGALG00000003584 193.27 1555.73 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
86. RPLP2 ENSGALG00000034811 192.15 1546.71 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
87. RPS21 ENSGALG00000005338 187.65 1510.49 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
88. RPL19 ENSGALG00000001658 186.53 1501.48 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
89. ATP5G3 185.41 1492.46 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
90. DDX5 ENSGALG00000003532 180.91 1456.24 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
91. CDK1 ENSGALG00000003085 173.05 1392.97 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
92. PRTG ENSGALG00000037336 170.80 1374.86 protogenin [Source:NCBI gene;Acc:415407]
93. HSPE1 ENSGALG00000009070 167.43 1347.73 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
94. MT-ATP8 MT-ATP8 165.18 1329.62
95. PRDX1 ENSGALG00000010243 162.93 1311.51 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. LDHB ENSGALG00000035836 161.81 1302.49 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
97. RPS8 ENSGALG00000010124 160.69 1293.48 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
98. RPL36AL ENSGALG00000004952 158.44 1275.37 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
99. RPS15 ENSGALG00000015195 158.44 1275.37 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
100. RPL35 ENSGALG00000035677 157.32 1266.35 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA