Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s15.

Sample reads: 124,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3522.31 28349.98
2. ENSGALG00000018384 ENSGALG00000018384 2532.59 20384.03
3. EEF1A EEF1A 2221.69 17881.69
4. MT-ND5 MT-ND5 2011.83 16192.59
5. MT-ATP6 MT-ATP6 1912.08 15389.74
6. MT-CO1 MT-CO1 1588.22 12783.09
7. gga-mir-3527 gga-mir-3527 1567.49 12616.24
8. MT-CYB MT-CYB 1526.03 12282.54
9. MT-ND4 MT-ND4 1208.65 9728.05
10. GAPDH ENSGALG00000014442 1189.22 9571.66 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. gga-mir-3533 ENSGALG00000027736 1066.15 8581.11 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND1 MT-ND1 991.02 7976.41
13. NME2 ENSGALG00000002932 901.63 7256.94 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 883.49 7110.94
15. RPL5 ENSGALG00000005922 768.20 6183.00 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. ENSGALG00000018386 ENSGALG00000018386 708.61 5703.38
17. RPL8 ENSGALG00000016232 687.88 5536.53 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. PPIA ENSGALG00000028600 685.29 5515.69 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPS3 ENSGALG00000017330 586.84 4723.29 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. RPL26 RPL26 581.65 4681.52
21. MT-ND2 MT-ND2 533.72 4295.75
22. ENO1 ENSGALG00000002377 480.61 3868.28 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPL7 ENSGALG00000035252 479.31 3857.82 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. TMSB4X ENSGALG00000026383 471.54 3795.28 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
25. RPL27A ENSGALG00000005948 465.06 3743.12 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL7A ENSGALG00000003197 462.47 3722.28 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. HMGN5 ENSGALG00000007131 448.22 3607.58 high mobility group nucleosome binding domain 5, transcript variant X1
28. RPS7 ENSGALG00000016392 448.22 3607.58 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPS10 ENSGALG00000002813 437.86 3524.20 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
30. CIRBP ENSGALG00000030918 430.09 3461.66 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
31. RPS6 ENSGALG00000015082 415.84 3346.97 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
32. RPL15 ENSGALG00000011290 408.07 3284.43 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. STMN1 ENSGALG00000001475 401.59 3232.27 stathmin 1 [Source:NCBI gene;Acc:396057]
34. RPS11 ENSGALG00000017299 395.11 3180.12 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. RPS4 RPS4 391.22 3148.81
36. RPS20 ENSGALG00000014432 388.63 3127.96 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
37. H3-IX H3-IX 384.75 3096.73
38. RPL21 ENSGALG00000027035 384.75 3096.73 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. EIF4G2 ENSGALG00000005587 376.97 3034.11 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
40. RPL23 ENSGALG00000001634 376.97 3034.11 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
41. RPL27 ENSGALG00000002837 375.68 3023.73 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. RPL31 ENSGALG00000016775 375.68 3023.73 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. RAN ENSGALG00000002569 369.20 2971.58 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
44. RPSA 354.95 2856.88 ribosomal protein SA
45. RPS23 ENSGALG00000015617 352.36 2836.04 ribosomal protein S23
46. CRABP-I ENSGALG00000003193 339.41 2731.81 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
47. RPL32 ENSGALG00000027142 336.82 2710.96 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPL18A 331.63 2669.19 ribosomal protein L18a
49. MDK ENSGALG00000008367 321.27 2585.80 midkine [Source:NCBI gene;Acc:423196]
50. SLC25A6_1 ENSGALG00000016691 318.68 2564.96 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. H2AFZ ENSGALG00000014023 314.79 2533.65 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
52. RPS15A ENSGALG00000006771 314.79 2533.65 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
53. RPS24 ENSGALG00000004871 313.50 2523.26 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
54. RPS16 ENSGALG00000026490 310.91 2502.42 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. ENSGALG00000028992 ENSGALG00000028992 281.11 2262.57
56. RPS3A ENSGALG00000010077 275.93 2220.87 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
57. RPL14 ENSGALG00000043379 273.34 2200.03 ribosomal protein L14
58. EEF1B2 ENSGALG00000008590 264.27 2127.03 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
59. RPL35A ENSGALG00000007611, ENSGALG00000041230 261.68 2106.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
60. RPL23A ENSGALG00000003966 256.50 2064.49 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
61. RPS27A ENSGALG00000036790 255.20 2054.03 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
62. RPLP1 ENSGALG00000030878 253.91 2043.64 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
63. RPL10A ENSGALG00000002644 242.25 1949.79 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
64. ENSGALG00000002696 ENSGALG00000002696 240.95 1939.33
65. RPL4 ENSGALG00000007711 239.66 1928.95 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
66. HNRNPDL ENSGALG00000023199 234.48 1887.26 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
67. RPS12 ENSGALG00000013990 234.48 1887.26 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
68. RPS29 ENSGALG00000012229 231.88 1866.33 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. LDHB ENSGALG00000035836 230.59 1855.95 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
70. ATP6V0C ENSGALG00000009229 229.29 1845.48 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
71. RPS14 ENSGALG00000004588 225.41 1814.25 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. RPS8 ENSGALG00000010124 222.82 1793.41 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
73. CRHOA CRHOA 218.93 1762.10
74. RPL6 ENSGALG00000004818 215.04 1730.79 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
75. HMGB1 ENSGALG00000042875 213.75 1720.41 high mobility group box 1 [Source:NCBI gene;Acc:395724]
76. HSPA8 ENSGALG00000006512 211.16 1699.56 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
77. RPL36 ENSGALG00000000474 207.27 1668.25 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. RPL13 ENSGALG00000006179 205.98 1657.87 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
79. MIF ENSGALG00000006326 204.68 1647.41 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
80. CALM CALM 203.38 1636.94
81. RPL38 ENSGALG00000001465 203.38 1636.94 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
82. SNRPG ENSGALG00000028409 202.09 1626.56 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
83. ANP32B ENSGALG00000037483 196.91 1584.87 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
84. FKBP4 ENSGALG00000014331 196.91 1584.87 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
85. ATP5G3 194.32 1564.02 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
86. CDK1 ENSGALG00000003085 194.32 1564.02 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
87. RPL3 ENSGALG00000012172 193.02 1553.56 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
88. RPL9 ENSGALG00000000150 186.54 1501.40 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
89. BTF3L4 ENSGALG00000010570 185.25 1491.02 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
90. DDX5 ENSGALG00000003532 183.95 1480.56 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
91. PRTG ENSGALG00000037336 181.36 1459.71 protogenin [Source:NCBI gene;Acc:415407]
92. RPLP2 ENSGALG00000034811 180.07 1449.33 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
93. TCEB3 ENSGALG00000034625 177.48 1428.48 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
94. KPNA2 ENSGALG00000003584 173.59 1397.17 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
95. SNRPE ENSGALG00000000137 172.29 1386.71 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
96. ERH ENSGALG00000017384 169.70 1365.86 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
97. HSP90AB1 ENSGALG00000010175 169.70 1365.86 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
98. PRDX1 ENSGALG00000010243 168.41 1355.48 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. NONO ENSGALG00000005507 167.11 1345.02 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
100. RPL24 ENSGALG00000015339 167.11 1345.02 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA