Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s14.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 3521.43 28343.70
2. MT-CO3 MT-CO3 3186.72 25649.65
3. MT-ND5 MT-ND5 2971.99 23921.30
4. MT-ATP6 MT-ATP6 2114.07 17015.97
5. EEF1A EEF1A 1930.58 15539.08
6. gga-mir-3527 gga-mir-3527 1689.64 13599.77
7. MT-CO1 MT-CO1 1504.14 12106.70
8. MT-ND4 MT-ND4 1366.03 10995.06
9. MT-ND1 MT-ND1 1322.68 10646.14
10. gga-mir-3533 ENSGALG00000027736 1301.51 10475.75 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-CYB MT-CYB 1291.42 10394.53
12. GAPDH ENSGALG00000014442 1153.31 9282.90 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 1037.37 8349.71 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 875.06 7043.29
15. PPIA ENSGALG00000028600 754.09 6069.61 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. ENSGALG00000018386 ENSGALG00000018386 726.87 5850.52
17. RPL5 ENSGALG00000005922 652.27 5250.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL8 ENSGALG00000016232 644.20 5185.11 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPL26 RPL26 599.84 4828.06
20. MT-ND2 MT-ND2 527.26 4243.87
21. RPS3 ENSGALG00000017330 505.08 4065.35 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. TMSB4X ENSGALG00000026383 497.01 4000.39 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
23. RPL27A ENSGALG00000005948 480.88 3870.56 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL7 ENSGALG00000035252 473.82 3813.74 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. ENO1 ENSGALG00000002377 432.49 3481.08 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
26. RPS7 ENSGALG00000016392 420.39 3383.68 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. RPL15 ENSGALG00000011290 417.37 3359.38 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. RPS10 ENSGALG00000002813 408.30 3286.37 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. RPS20 ENSGALG00000014432 408.30 3286.37 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
30. RPL27 ENSGALG00000002837 404.26 3253.86 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. CIRBP ENSGALG00000030918 399.22 3213.29 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. RPS6 ENSGALG00000015082 394.18 3172.72 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
33. EIF4G2 ENSGALG00000005587 388.13 3124.03 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
34. STMN1 ENSGALG00000001475 388.13 3124.03 stathmin 1 [Source:NCBI gene;Acc:396057]
35. HMGN5 ENSGALG00000007131 375.03 3018.59 high mobility group nucleosome binding domain 5, transcript variant X1
36. H3-IX H3-IX 368.98 2969.89
37. RPL23 ENSGALG00000001634 366.96 2953.63 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
38. RPL7A ENSGALG00000003197 361.92 2913.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RAN ENSGALG00000002569 359.91 2896.89 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. EEF1B2 ENSGALG00000008590 346.80 2791.36 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
41. RPS23 ENSGALG00000015617 340.75 2742.67 ribosomal protein S23
42. RPS11 ENSGALG00000017299 333.69 2685.84 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPL21 ENSGALG00000027035 328.65 2645.28 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. ATP6V0C ENSGALG00000009229 326.64 2629.10 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
45. RPL31 ENSGALG00000016775 315.55 2539.84 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
46. SLC25A6_1 ENSGALG00000016691 304.46 2450.57 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. RPS24 ENSGALG00000004871 302.44 2434.31 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
48. RPS4 RPS4 301.43 2426.19
49. RPL14 ENSGALG00000043379 297.40 2393.75 ribosomal protein L14
50. RPS16 ENSGALG00000026490 296.39 2385.62 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. H2AFZ ENSGALG00000014023 294.38 2369.44 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
52. MDK ENSGALG00000008367 293.37 2361.31 midkine [Source:NCBI gene;Acc:423196]
53. RPS15A ENSGALG00000006771 290.34 2336.92 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
54. RPSA 288.33 2320.74 ribosomal protein SA
55. RPL18A 285.30 2296.36 ribosomal protein L18a
56. ENSGALG00000028992 ENSGALG00000028992 281.27 2263.92
57. RPLP1 ENSGALG00000030878 278.25 2239.61 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
58. RPS27A ENSGALG00000036790 271.19 2182.79 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. RPL23A ENSGALG00000003966 270.18 2174.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
60. CRABP-I ENSGALG00000003193 268.16 2158.40 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
61. RPS3A ENSGALG00000010077 268.16 2158.40 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
62. RPL4 ENSGALG00000007711 257.08 2069.22 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
63. RPL32 ENSGALG00000027142 254.05 2044.83 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
64. ENSGALG00000002696 ENSGALG00000002696 250.02 2012.39
65. EIF1 ENSGALG00000028517 249.01 2004.26 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
66. RPS29 ENSGALG00000012229 239.94 1931.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
67. SNRPG ENSGALG00000028409 232.88 1874.43 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
68. RPL36 ENSGALG00000000474 229.86 1850.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
69. RPS12 ENSGALG00000013990 220.78 1777.04 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
70. HNRNPDL ENSGALG00000023199 218.77 1760.86 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
71. RPL13 ENSGALG00000006179 218.77 1760.86 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
72. CRHOA CRHOA 217.76 1752.73
73. HSPA8 ENSGALG00000006512 214.73 1728.34 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
74. MIF ENSGALG00000006326 214.73 1728.34 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
75. LDHB ENSGALG00000035836 209.69 1687.78 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. RPL6 ENSGALG00000004818 209.69 1687.78 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. TPT1 ENSGALG00000028872 208.68 1679.65 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
78. RPL35A ENSGALG00000007611, ENSGALG00000041230 206.67 1663.47 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
79. RPLP2 ENSGALG00000034811 203.64 1639.08 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
80. TCEB3 ENSGALG00000034625 199.61 1606.64 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. CALM CALM 190.54 1533.64
82. RPL9 ENSGALG00000000150 190.54 1533.64 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
83. FKBP4 ENSGALG00000014331 187.51 1509.25 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
84. RPS14 ENSGALG00000004588 187.51 1509.25 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
85. RPL3 ENSGALG00000012172 185.50 1493.07 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
86. ACTC1 ENSGALG00000009844 182.47 1468.69 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
87. ATP5G3 182.47 1468.69 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. NONO ENSGALG00000005507 179.45 1444.38 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
89. RPS21 ENSGALG00000005338 179.45 1444.38 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
90. CDK1 ENSGALG00000003085 177.43 1428.12 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
91. RPL10A ENSGALG00000002644 177.43 1428.12 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. RPL38 ENSGALG00000001465 177.43 1428.12 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
93. RPL24 ENSGALG00000015339 173.40 1395.68 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
94. HMGB1 ENSGALG00000042875 170.38 1371.37 high mobility group box 1 [Source:NCBI gene;Acc:395724]
95. ERH ENSGALG00000017384 169.37 1363.25 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
96. DDX5 ENSGALG00000003532 168.36 1355.12 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
97. RPL12 ENSGALG00000008806 168.36 1355.12 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
98. SNRPE ENSGALG00000000137 167.35 1346.99 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
99. BTF3L4 ENSGALG00000010570 166.34 1338.86 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
100. PRDX1 ENSGALG00000010243 164.33 1322.68 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA