Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s12.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 4799.72 38635.61
2. MT-ND5 MT-ND5 2789.81 22456.73
3. MT-CO3 MT-CO3 2661.21 21421.55
4. MT-ATP6 MT-ATP6 2217.33 17848.52
5. EEF1A EEF1A 1812.86 14592.72
6. MT-CYB MT-CYB 1547.36 12455.56
7. MT-CO1 MT-CO1 1466.47 11804.43
8. gga-mir-3527 gga-mir-3527 1435.35 11553.93
9. MT-ND4 MT-ND4 1408.39 11336.91
10. gga-mir-3533 ENSGALG00000027736 1400.09 11270.10 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1171.93 9433.51 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1171.93 9433.51
13. NME2 ENSGALG00000002932 1024.66 8248.06 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND2 MT-ND2 804.79 6478.20
15. MT-ND3 MT-ND3 752.94 6060.83
16. RPL5 ENSGALG00000005922 674.12 5426.37 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. PPIA ENSGALG00000028600 655.45 5276.08 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
18. ENSGALG00000018386 ENSGALG00000018386 628.49 5059.06
19. RPL26 RPL26 618.11 4975.51
20. RPL8 ENSGALG00000016232 611.89 4925.44 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. TMSB4X ENSGALG00000026383 555.89 4474.67 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. RPS4 RPS4 472.92 3806.80
23. RPL7 ENSGALG00000035252 458.40 3689.92 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. RPS3 ENSGALG00000017330 458.40 3689.92 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. RPL27A ENSGALG00000005948 456.33 3673.25 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. CIRBP ENSGALG00000030918 450.10 3623.10 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. RPS23 ENSGALG00000015617 439.73 3539.63 ribosomal protein S23
28. RPL15 ENSGALG00000011290 433.51 3489.56 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. ENO1 ENSGALG00000002377 431.44 3472.90 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
30. RPL7A ENSGALG00000003197 427.29 3439.49 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RAN ENSGALG00000002569 423.14 3406.09 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
32. RPL21 ENSGALG00000027035 416.92 3356.02 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. RPS6 ENSGALG00000015082 414.84 3339.28 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. RPS7 ENSGALG00000016392 394.10 3172.33 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
35. EIF4G2 ENSGALG00000005587 392.03 3155.67 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
36. RPL23 ENSGALG00000001634 381.65 3072.11 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
37. RPS27A ENSGALG00000036790 356.76 2871.76 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPL27 ENSGALG00000002837 354.69 2855.10 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPL14 ENSGALG00000043379 352.62 2838.43 ribosomal protein L14
40. RPSA 340.17 2738.22 ribosomal protein SA
41. ATP6V0C ENSGALG00000009229 336.02 2704.81 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
42. CRABP-I ENSGALG00000003193 327.72 2638.00 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
43. RPS10 ENSGALG00000002813 327.72 2638.00 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
44. RPS20 ENSGALG00000014432 325.65 2621.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
45. STMN1 ENSGALG00000001475 325.65 2621.34 stathmin 1 [Source:NCBI gene;Acc:396057]
46. HMGN5 ENSGALG00000007131 323.58 2604.67 high mobility group nucleosome binding domain 5, transcript variant X1
47. EEF1B2 ENSGALG00000008590 315.28 2537.86 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPLP1 ENSGALG00000030878 306.98 2471.05 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
49. RPL32 ENSGALG00000027142 304.91 2454.39 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. H3-IX H3-IX 302.83 2437.65
51. RPS12 ENSGALG00000013990 294.54 2370.92 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
52. RPL18A 292.46 2354.17 ribosomal protein L18a
53. H2AFZ ENSGALG00000014023 290.39 2337.51 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
54. RPL31 ENSGALG00000016775 288.31 2320.77 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
55. RPS11 ENSGALG00000017299 284.17 2287.44 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
56. LDHB ENSGALG00000035836 275.87 2220.63 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
57. RPL6 ENSGALG00000004818 275.87 2220.63 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
58. SNRPG ENSGALG00000028409 273.80 2203.97 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
59. RPS24 ENSGALG00000004871 269.65 2170.56 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
60. ENSGALG00000028992 ENSGALG00000028992 267.57 2153.82
61. RPS29 ENSGALG00000012229 267.57 2153.82 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
62. RPS15A ENSGALG00000006771 261.35 2103.75 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
63. MDK ENSGALG00000008367 259.28 2087.09 midkine [Source:NCBI gene;Acc:423196]
64. EIF1 ENSGALG00000028517 257.20 2070.35 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
65. SLC25A6_1 ENSGALG00000016691 246.83 1986.87 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
66. RPL23A ENSGALG00000003966 242.68 1953.47 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
67. RPS14 ENSGALG00000004588 232.31 1869.99 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. RPS16 ENSGALG00000026490 224.01 1803.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
69. RPL36 ENSGALG00000000474 221.94 1786.52 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. RPL4 ENSGALG00000007711 221.94 1786.52 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
71. ATP5G3 217.79 1753.11 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
72. RPL13 ENSGALG00000006179 217.79 1753.11 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
73. MIF ENSGALG00000006326 209.50 1686.38 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
74. ANP32B ENSGALG00000037483 205.35 1652.98 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. NONO ENSGALG00000005507 205.35 1652.98 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
76. KPNA2 ENSGALG00000003584 203.27 1636.23 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
77. RPS15 ENSGALG00000015195 203.27 1636.23 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
78. BTF3L4 ENSGALG00000010570 197.05 1586.16 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
79. RPL12 ENSGALG00000008806 197.05 1586.16 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
80. RPL3 ENSGALG00000012172 197.05 1586.16 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
81. RPLP2 ENSGALG00000034811 197.05 1586.16 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
82. ENSGALG00000002696 ENSGALG00000002696 194.98 1569.50
83. HMGB2 ENSGALG00000010745 194.98 1569.50 high mobility group box 2 [Source:NCBI gene;Acc:396482]
84. FKBP4 ENSGALG00000014331 192.90 1552.76 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
85. RPL10A ENSGALG00000002644 192.90 1552.76 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPS8 ENSGALG00000010124 192.90 1552.76 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
87. TPT1 ENSGALG00000028872 192.90 1552.76 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
88. NDUFB9 ENSGALG00000042242 190.83 1536.10 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
89. HMGB1 ENSGALG00000042875 184.60 1485.95 high mobility group box 1 [Source:NCBI gene;Acc:395724]
90. HSPA8 ENSGALG00000006512 184.60 1485.95 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
91. RPL35A ENSGALG00000007611, ENSGALG00000041230 182.53 1469.29 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
92. HNRNPDL ENSGALG00000023199 180.46 1452.62 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. TCEB3 ENSGALG00000034625 180.46 1452.62 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
94. TXN ENSGALG00000015704 180.46 1452.62 thioredoxin [Source:NCBI gene;Acc:396437]
95. CALM CALM 178.38 1435.88
96. RPL38 ENSGALG00000001465 178.38 1435.88 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
97. EIF5A2 ENSGALG00000009309 176.31 1419.22 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
98. HSPE1 ENSGALG00000009070 176.31 1419.22 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
99. MT-ATP8 MT-ATP8 176.31 1419.22
100. RPL9 ENSGALG00000000150 174.23 1402.47 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA