Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s11.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3140.75 25279.29
2. ENSGALG00000018384 ENSGALG00000018384 2884.96 23220.48
3. MT-ATP6 MT-ATP6 2258.43 18177.66
4. EEF1A EEF1A 2247.09 18086.39
5. MT-ND5 MT-ND5 2216.33 17838.81
6. gga-mir-3527 gga-mir-3527 1528.28 12300.83
7. MT-CO1 MT-CO1 1440.86 11597.20
8. MT-ND4 MT-ND4 1436.00 11558.09
9. GAPDH ENSGALG00000014442 1238.49 9968.37 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-CYB MT-CYB 1152.69 9277.78
11. MT-ND1 MT-ND1 1087.93 8756.54
12. gga-mir-3533 ENSGALG00000027736 1071.74 8626.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. NME2 ENSGALG00000002932 964.89 7766.21 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 867.75 6984.35
15. RPL8 ENSGALG00000016232 746.33 6007.07 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
16. RPL5 ENSGALG00000005922 709.10 5707.41 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. TMSB4X ENSGALG00000026383 699.38 5629.17 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. ENSGALG00000018386 ENSGALG00000018386 590.91 4756.12
19. PPIA ENSGALG00000028600 565.01 4547.66 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RPL26 RPL26 534.25 4300.07
21. ENO1 ENSGALG00000002377 505.11 4065.53 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
22. RPS3 ENSGALG00000017330 482.44 3883.07 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. RPS6 ENSGALG00000015082 477.59 3844.03 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
24. CRABP-I ENSGALG00000003193 463.02 3726.76 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
25. STMN1 ENSGALG00000001475 450.07 3622.53 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPS4 RPS4 445.21 3583.41
27. RPS7 ENSGALG00000016392 441.97 3557.33 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. RPL7 ENSGALG00000035252 440.35 3544.29 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. MT-ND2 MT-ND2 437.11 3518.21
30. RAN ENSGALG00000002569 437.11 3518.21 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
31. EIF4G2 ENSGALG00000005587 435.50 3505.26 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
32. HMGN5 ENSGALG00000007131 435.50 3505.26 high mobility group nucleosome binding domain 5, transcript variant X1
33. CIRBP ENSGALG00000030918 430.64 3466.14 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. RPL7A ENSGALG00000003197 427.40 3440.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL15 ENSGALG00000011290 424.16 3413.98 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
36. RPL27A ENSGALG00000005948 409.59 3296.71 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPS20 ENSGALG00000014432 395.02 3179.44 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
38. RPS23 ENSGALG00000015617 386.93 3114.32 ribosomal protein S23
39. RPS10 ENSGALG00000002813 378.83 3049.13 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
40. RPL23 ENSGALG00000001634 367.50 2957.94 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
41. RPL21 ENSGALG00000027035 364.26 2931.86 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
42. H3-IX H3-IX 354.55 2853.70
43. RPS15A ENSGALG00000006771 351.31 2827.63 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. RPL27 ENSGALG00000002837 341.60 2749.47 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. ENSGALG00000028992 ENSGALG00000028992 339.98 2736.43
46. RPS27A ENSGALG00000036790 335.12 2697.32 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. RPS11 ENSGALG00000017299 333.50 2684.28 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. RPL14 ENSGALG00000043379 331.88 2671.24 ribosomal protein L14
49. RPL18A 314.07 2527.89 ribosomal protein L18a
50. H2AFZ ENSGALG00000014023 307.60 2475.81 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
51. RPL31 ENSGALG00000016775 307.60 2475.81 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
52. RPS24 ENSGALG00000004871 297.89 2397.66 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
53. ATP6V0C ENSGALG00000009229 291.41 2345.50 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
54. SNRPG ENSGALG00000028409 284.93 2293.35 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
55. RPSA 283.32 2280.39 ribosomal protein SA
56. EEF1B2 ENSGALG00000008590 281.70 2267.35 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
57. RPL32 ENSGALG00000027142 273.60 2202.15 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
58. LDHB ENSGALG00000035836 271.98 2189.11 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
59. SLC25A6_1 ENSGALG00000016691 271.98 2189.11 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
60. RPS15 ENSGALG00000015195 263.89 2124.00 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
61. HNRNPDL ENSGALG00000023199 262.27 2110.96 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
62. MDK ENSGALG00000008367 262.27 2110.96 midkine [Source:NCBI gene;Acc:423196]
63. RPLP1 ENSGALG00000030878 260.65 2097.92 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
64. RPS12 ENSGALG00000013990 260.65 2097.92 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
65. RPS3A ENSGALG00000010077 259.03 2084.88 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
66. KPNA2 ENSGALG00000003584 255.79 2058.80 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
67. ENSGALG00000002696 ENSGALG00000002696 254.17 2045.77
68. RPL6 ENSGALG00000004818 246.08 1980.65 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RPS16 ENSGALG00000026490 246.08 1980.65 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
70. RPL23A ENSGALG00000003966 244.46 1967.61 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
71. RPL35A ENSGALG00000007611, ENSGALG00000041230 241.22 1941.53 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
72. RPS29 ENSGALG00000012229 236.37 1902.50 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
73. MIF ENSGALG00000006326 231.51 1863.38 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
74. BTF3L4 ENSGALG00000010570 228.27 1837.30 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
75. RPS14 ENSGALG00000004588 218.56 1759.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. CDK1 ENSGALG00000003085 216.94 1746.11 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
77. RPS8 ENSGALG00000010124 216.94 1746.11 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
78. PRDX1 ENSGALG00000010243 215.32 1733.07 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. RPL13 ENSGALG00000006179 215.32 1733.07 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
80. ANP32B ENSGALG00000037483 210.46 1693.95 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. HMGB1 ENSGALG00000042875 210.46 1693.95 high mobility group box 1 [Source:NCBI gene;Acc:395724]
82. HSP90AB1 ENSGALG00000010175 208.84 1680.91 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
83. HSPA8 ENSGALG00000006512 205.61 1654.92 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
84. EIF1 ENSGALG00000028517 200.75 1615.80 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
85. RPL38 ENSGALG00000001465 200.75 1615.80 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
86. FKBP4 ENSGALG00000014331 199.13 1602.76 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
87. ATP5G3 192.65 1550.60 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. RPL10A ENSGALG00000002644 187.80 1511.57 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. SNRPE ENSGALG00000000137 187.80 1511.57 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
90. EIF5A2 ENSGALG00000009309 186.18 1498.53 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
91. HSPE1 ENSGALG00000009070 181.32 1459.41 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
92. RPL36 ENSGALG00000000474 181.32 1459.41 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
93. ERH ENSGALG00000017384 176.46 1420.29 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
94. TPT1 ENSGALG00000028872 176.46 1420.29 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
95. PGK1 ENSGALG00000007936 171.61 1381.26 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
96. RPLP2 ENSGALG00000034811 171.61 1381.26 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
97. CRHOA CRHOA 169.99 1368.22
98. RPL9 ENSGALG00000000150 169.99 1368.22 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
99. CALM CALM 168.37 1355.18
100. RPL36AL ENSGALG00000004952 168.37 1355.18 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA