Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s10.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3880.41 31232.81
2. MT-ATP6 MT-ATP6 3489.08 28083.06
3. MT-ND5 MT-ND5 2523.33 20309.89
4. MT-ND4 MT-ND4 2318.95 18664.86
5. gga-mir-3527 gga-mir-3527 2027.38 16318.06
6. MT-CO1 MT-CO1 1925.68 15499.50
7. EEF1A EEF1A 1866.59 15023.89
8. MT-CYB MT-CYB 1555.65 12521.18
9. MT-ND1 MT-ND1 1463.63 11780.53
10. gga-mir-3533 ENSGALG00000027736 1187.56 9558.48 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1149.79 9254.48 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. NME2 ENSGALG00000002932 1060.67 8537.17 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. MT-ND3 MT-ND3 953.15 7671.75
14. RPL5 ENSGALG00000005922 776.86 6252.82 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. PPIA ENSGALG00000028600 705.18 5675.88 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. ENSGALG00000018384 ENSGALG00000018384 666.43 5363.99
17. RPS3 ENSGALG00000017330 621.87 5005.33 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
18. RPL26 RPL26 577.32 4646.76
19. RPL8 ENSGALG00000016232 557.94 4490.77 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. ENO1 ENSGALG00000002377 514.35 4139.92 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. TMSB4X ENSGALG00000026383 511.45 4116.58 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. RPL7 ENSGALG00000035252 503.70 4054.20 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPS7 ENSGALG00000016392 501.76 4038.59 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RAN ENSGALG00000002569 497.89 4007.44 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
25. RPL27A ENSGALG00000005948 476.58 3835.92 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL15 ENSGALG00000011290 470.76 3789.07 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPS23 ENSGALG00000015617 448.48 3609.75 ribosomal protein S23
28. CRABP-I ENSGALG00000003193 434.92 3500.60 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
29. RPS20 ENSGALG00000014432 432.02 3477.26 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
30. RPL23 ENSGALG00000001634 418.46 3368.12 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. RPL7A ENSGALG00000003197 406.83 3274.51 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPS6 ENSGALG00000015082 406.83 3274.51 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
33. RPL21 ENSGALG00000027035 399.08 3212.13 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
34. RPS10 ENSGALG00000002813 399.08 3212.13 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
35. EIF4G2 ENSGALG00000005587 397.15 3196.60 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
36. STMN1 ENSGALG00000001475 390.37 3142.03 stathmin 1 [Source:NCBI gene;Acc:396057]
37. HMGN5 ENSGALG00000007131 387.46 3118.60 high mobility group nucleosome binding domain 5, transcript variant X1
38. CIRBP ENSGALG00000030918 386.49 3110.80 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. RPL27 ENSGALG00000002837 383.59 3087.46 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPS27A ENSGALG00000036790 375.84 3025.08 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. RPS24 ENSGALG00000004871 373.90 3009.46 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
42. H3-IX H3-IX 351.62 2830.13
43. RPSA 348.71 2806.71 ribosomal protein SA
44. RPL31 ENSGALG00000016775 346.78 2791.18 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
45. RPS16 ENSGALG00000026490 346.78 2791.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. ENSGALG00000028992 ENSGALG00000028992 343.87 2767.76
47. RPL14 ENSGALG00000043379 343.87 2767.76 ribosomal protein L14
48. MT-ND2 MT-ND2 339.03 2728.80
49. RPS15A ENSGALG00000006771 334.18 2689.76 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. RPS11 ENSGALG00000017299 333.22 2682.04 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. RPS3A ENSGALG00000010077 329.34 2650.81 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
52. RPL6 ENSGALG00000004818 328.37 2643.00 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
53. SNRPG ENSGALG00000028409 322.56 2596.23 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
54. SLC25A6_1 ENSGALG00000016691 321.59 2588.43 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
55. LDHB ENSGALG00000035836 314.81 2533.86 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
56. RPS4 RPS4 307.06 2471.48
57. RPS12 ENSGALG00000013990 300.28 2416.91 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
58. RPL18A 299.31 2409.10 ribosomal protein L18a
59. RPL32 ENSGALG00000027142 295.44 2377.95 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
60. EEF1B2 ENSGALG00000008590 275.10 2214.24 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
61. MDK ENSGALG00000008367 275.10 2214.24 midkine [Source:NCBI gene;Acc:423196]
62. RPL23A ENSGALG00000003966 270.25 2175.20 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
63. RPL4 ENSGALG00000007711 267.35 2151.86 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
64. RPS29 ENSGALG00000012229 261.54 2105.09 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
65. ATP6V0C ENSGALG00000009229 260.57 2097.29 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
66. BTF3L4 ENSGALG00000010570 257.66 2073.86 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
67. H2AFZ ENSGALG00000014023 257.66 2073.86 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
68. RPL36 ENSGALG00000000474 254.75 2050.44 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
69. MIF ENSGALG00000006326 253.79 2042.72 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
70. RPL13 ENSGALG00000006179 250.88 2019.29 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
71. RPL38 ENSGALG00000001465 243.13 1956.92 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
72. HNRNPDL ENSGALG00000023199 240.23 1933.57 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
73. RPLP1 ENSGALG00000030878 236.35 1902.34 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
74. RPL35A ENSGALG00000007611, ENSGALG00000041230 233.44 1878.92 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
75. ENSGALG00000018386 ENSGALG00000018386 228.60 1839.97
76. RPS15 ENSGALG00000015195 228.60 1839.97 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
77. RPL10A ENSGALG00000002644 224.73 1808.82 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. ATP5G3 223.76 1801.01 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. PRDX1 ENSGALG00000010243 207.29 1668.44 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
80. ENSGALG00000002696 ENSGALG00000002696 204.39 1645.10
81. HSPE1 ENSGALG00000009070 201.48 1621.68 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
82. RPS14 ENSGALG00000004588 200.51 1613.87 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
83. TCEB3 ENSGALG00000034625 200.51 1613.87 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
84. RPS8 ENSGALG00000010124 191.79 1543.69 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
85. HMGB1 ENSGALG00000042875 190.82 1535.88 high mobility group box 1 [Source:NCBI gene;Acc:395724]
86. RPL37A ENSGALG00000011472 190.82 1535.88 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
87. CRHOA CRHOA 189.86 1528.15
88. SNRPE ENSGALG00000000137 188.89 1520.35 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
89. CALM CALM 186.95 1504.73
90. RPS21 ENSGALG00000005338 184.04 1481.31 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
91. RPL3 ENSGALG00000012172 183.07 1473.50 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
92. RPL9 ENSGALG00000000150 183.07 1473.50 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
93. ANP32B ENSGALG00000037483 181.14 1457.97 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
94. RPL36AL ENSGALG00000004952 179.20 1442.35 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
95. CDK1 ENSGALG00000003085 177.26 1426.74 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
96. KPNA2 ENSGALG00000003584 177.26 1426.74 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
97. EIF5A2 ENSGALG00000009309 175.33 1411.20 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
98. FKBP4 ENSGALG00000014331 174.36 1403.40 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
99. PGK1 ENSGALG00000007936 174.36 1403.40 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
100. RPL37 ENSGALG00000014833 174.36 1403.40 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA