Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s55.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3081.17 24800.07
2. MT-ATP6 MT-ATP6 2981.78 24000.09
3. MT-ND5 MT-ND5 2584.21 20800.08
4. MT-ND4 MT-ND4 2484.82 20000.10
5. HBE 2186.64 17600.07 hemoglobin subunit epsilon
6. EEF1A EEF1A 2087.25 16800.09
7. MT-CYB MT-CYB 2087.25 16800.09
8. MT-CO1 MT-CO1 1888.46 15200.05
9. HBG1 HBG1 1590.28 12800.02
10. MT-ND1 MT-ND1 1490.89 12000.04
11. MT-ND3 MT-ND3 1490.89 12000.04
12. gga-mir-3527 gga-mir-3527 1490.89 12000.04
13. gga-mir-3533 ENSGALG00000027736 1490.89 12000.04 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. GAPDH ENSGALG00000014442 1391.50 11200.06 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. HBZ ENSGALG00000023740 1292.11 10400.08 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
16. PPIA ENSGALG00000028600 993.93 8000.06 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPL23 ENSGALG00000001634 795.14 6400.01 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
18. RPS15A ENSGALG00000006771 795.14 6400.01 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
19. RPS27A ENSGALG00000036790 795.14 6400.01 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
20. CRHOA CRHOA 596.36 4800.05
21. IGF2BP3 ENSGALG00000010961 596.36 4800.05 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
22. NME2 ENSGALG00000002932 596.36 4800.05 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
23. RPL14 ENSGALG00000043379 596.36 4800.05 ribosomal protein L14
24. RPL35A ENSGALG00000007611, ENSGALG00000041230 596.36 4800.05 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
25. RPL37A ENSGALG00000011472 596.36 4800.05 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
26. RPL5 ENSGALG00000005922 596.36 4800.05 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
27. RPL8 ENSGALG00000016232 596.36 4800.05 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. RPS12 ENSGALG00000013990 596.36 4800.05 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
29. RPS3 ENSGALG00000017330 596.36 4800.05 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
30. STMN1 ENSGALG00000001475 596.36 4800.05 stathmin 1 [Source:NCBI gene;Acc:396057]
31. BUB3 ENSGALG00000009681 496.96 3999.99 BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
32. DDX5 ENSGALG00000003532 496.96 3999.99 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
33. EEF2 ENSGALG00000033884 496.96 3999.99 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
34. FKBP4 ENSGALG00000014331 496.96 3999.99 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
35. HSPA8 ENSGALG00000006512 496.96 3999.99 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
36. LDHB ENSGALG00000035836 496.96 3999.99 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
37. RPL13 ENSGALG00000006179 496.96 3999.99 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
38. RPL27A ENSGALG00000005948 496.96 3999.99 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPL7 ENSGALG00000035252 496.96 3999.99 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
40. RPS23 ENSGALG00000015617 496.96 3999.99 ribosomal protein S23
41. TCEB3 ENSGALG00000034625 496.96 3999.99 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
42. EEF1B2 ENSGALG00000008590 397.57 3200.01 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. EIF4G2 ENSGALG00000005587 397.57 3200.01 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
44. EIF5A2 ENSGALG00000009309 397.57 3200.01 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
45. ERH ENSGALG00000017384 397.57 3200.01 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
46. MDK ENSGALG00000008367 397.57 3200.01 midkine [Source:NCBI gene;Acc:423196]
47. MT-ND2 MT-ND2 397.57 3200.01
48. NDUFA11 ENSGALG00000021692 397.57 3200.01 NADH:ubiquinone oxidoreductase subunit A11
49. PSMB1 ENSGALG00000011174 397.57 3200.01 proteasome subunit beta 1 [Source:NCBI gene;Acc:421551]
50. PSME3 ENSGALG00000002937 397.57 3200.01 proteasome activator subunit 3 [Source:NCBI gene;Acc:420017]
51. RPL36 ENSGALG00000000474 397.57 3200.01 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
52. RPL38 ENSGALG00000001465 397.57 3200.01 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
53. RPL7A ENSGALG00000003197 397.57 3200.01 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
54. RPLP1 ENSGALG00000030878 397.57 3200.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
55. RPS13 ENSGALG00000006096 397.57 3200.01 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
56. RPS16 ENSGALG00000026490 397.57 3200.01 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. RPS20 ENSGALG00000014432 397.57 3200.01 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
58. RPS29 ENSGALG00000012229 397.57 3200.01 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
59. RPS4 RPS4 397.57 3200.01
60. RPS7 ENSGALG00000016392 397.57 3200.01 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
61. SET ENSGALG00000004701 397.57 3200.01 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
62. TFDP1 ENSGALG00000016823 397.57 3200.01 transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
63. UBB ENSGALG00000004509 397.57 3200.01 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
64. ATP5L ENSGALG00000006899 298.18 2400.02 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
65. C5H11ORF58 C5H11ORF58 298.18 2400.02
66. CAPZA2 ENSGALG00000043437 298.18 2400.02 capping actin protein of muscle Z-line alpha subunit 2 [Source:NCBI gene;Acc:417771]
67. CHCHD2 ENSGALG00000002495 298.18 2400.02 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
68. CIRBP ENSGALG00000030918 298.18 2400.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. CNN3 ENSGALG00000005597 298.18 2400.02 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
70. CYB5R3 ENSGALG00000014122 298.18 2400.02 cytochrome b5 reductase 3 [Source:NCBI gene;Acc:418220]
71. ENO1 ENSGALG00000002377 298.18 2400.02 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
72. ENSGALG00000002696 ENSGALG00000002696 298.18 2400.02
73. HMGB2 ENSGALG00000010745 298.18 2400.02 high mobility group box 2 [Source:NCBI gene;Acc:396482]
74. HNRNPA2B1 ENSGALG00000011036 298.18 2400.02 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:420627]
75. HNRNPU ENSGALG00000010671 298.18 2400.02 heterogeneous nuclear ribonucleoprotein U [Source:HGNC Symbol;Acc:HGNC:5048]
76. IPO7 ENSGALG00000005807 298.18 2400.02 importin 7 [Source:HGNC Symbol;Acc:HGNC:9852]
77. KPNA2 ENSGALG00000003584 298.18 2400.02 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
78. KRT19 ENSGALG00000019719 298.18 2400.02 keratin 19 [Source:NCBI gene;Acc:395861]
79. MIF ENSGALG00000006326 298.18 2400.02 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
80. NONO ENSGALG00000005507 298.18 2400.02 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
81. NUCKS1 ENSGALG00000000708 298.18 2400.02 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
82. PAFAH1B1 ENSGALG00000005834 298.18 2400.02 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [Source:NCBI gene;Acc:374224]
83. RAN ENSGALG00000002569 298.18 2400.02 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
84. RPL12 ENSGALG00000008806 298.18 2400.02 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
85. RPL15 ENSGALG00000011290 298.18 2400.02 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
86. RPL23A ENSGALG00000003966 298.18 2400.02 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
87. RPL26 RPL26 298.18 2400.02
88. RPL36AL ENSGALG00000004952 298.18 2400.02 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
89. RPL37 ENSGALG00000014833 298.18 2400.02 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
90. RPL4 ENSGALG00000007711 298.18 2400.02 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
91. RPL6 ENSGALG00000004818 298.18 2400.02 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
92. RPS10 ENSGALG00000002813 298.18 2400.02 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
93. RPS24 ENSGALG00000004871 298.18 2400.02 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
94. RPSA 298.18 2400.02 ribosomal protein SA
95. SRSF7 ENSGALG00000033120 298.18 2400.02 serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:426265]
96. TCOF1 ENSGALG00000005535 298.18 2400.02 treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
97. TMSB4X ENSGALG00000026383 298.18 2400.02 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
98. XPO1 ENSGALG00000029476 298.18 2400.02 exportin 1 [Source:NCBI gene;Acc:421192]
99. YY1 ENSGALG00000017388 298.18 2400.02 YY1 transcription factor [Source:NCBI gene;Acc:423455]
100. ACTG1_1 ENSGALG00000001381 198.79 1600.04 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA