Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s21.

Sample reads: 124,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3887.47 31287.71
2. MT-ATP6 MT-ATP6 2970.91 23910.91
3. MT-ND5 MT-ND5 2012.21 16194.96
4. MT-CYB MT-CYB 1949.00 15686.23
5. GAPDH ENSGALG00000014442 1896.33 15262.32 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. EEF1A EEF1A 1632.95 13142.55
7. MT-ND4 MT-ND4 1601.34 12888.14
8. MT-ND1 MT-ND1 1316.89 10598.79
9. MT-ND3 MT-ND3 1316.89 10598.79
10. RPS23 ENSGALG00000015617 1169.40 9411.74 ribosomal protein S23
11. gga-mir-3527 gga-mir-3527 1053.51 8479.01
12. MT-CO1 MT-CO1 958.70 7715.95
13. RPS6 ENSGALG00000015082 927.09 7461.54 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
14. ENO1 ENSGALG00000002377 874.42 7037.64 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
15. PPIA ENSGALG00000028600 821.74 6613.65 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPL8 ENSGALG00000016232 790.14 6359.32 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. EIF4G2 ENSGALG00000005587 684.78 5511.35 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. STMN1 ENSGALG00000001475 663.71 5341.77 stathmin 1 [Source:NCBI gene;Acc:396057]
19. NME2 ENSGALG00000002932 642.64 5172.19 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
20. RPS7 ENSGALG00000016392 642.64 5172.19 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. RPL26 RPL26 621.57 5002.61
22. RPL5 ENSGALG00000005922 600.50 4833.03 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
23. ENSGALG00000002696 ENSGALG00000002696 589.97 4748.28
24. gga-mir-3533 ENSGALG00000027736 568.90 4578.70 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
25. RPL7A ENSGALG00000003197 526.76 4239.55 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPS12 ENSGALG00000013990 516.22 4154.72 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. CRABP-I ENSGALG00000003193 495.15 3985.14 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
28. ENSGALG00000018384 ENSGALG00000018384 484.62 3900.39
29. RPL14 ENSGALG00000043379 484.62 3900.39 ribosomal protein L14
30. RPL15 ENSGALG00000011290 484.62 3900.39 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. RPL23 ENSGALG00000001634 484.62 3900.39 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. ENSGALG00000018386 ENSGALG00000018386 442.48 3561.23
33. RPS4 RPS4 442.48 3561.23
34. RPS11 ENSGALG00000017299 431.94 3476.40 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. RPL18A 421.41 3391.65 ribosomal protein L18a
36. TMSB4X ENSGALG00000026383 421.41 3391.65 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
37. EEF1B2 ENSGALG00000008590 389.80 3137.25 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
38. SNRPG ENSGALG00000028409 389.80 3137.25 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
39. RPS21 ENSGALG00000005338 379.27 3052.50 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. RPS29 ENSGALG00000012229 379.27 3052.50 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
41. RPS3 ENSGALG00000017330 379.27 3052.50 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
42. LDHB ENSGALG00000035836 368.73 2967.67 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
43. RPL7 ENSGALG00000035252 368.73 2967.67 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
44. RPS15A ENSGALG00000006771 368.73 2967.67 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. H2AFZ ENSGALG00000014023 358.19 2882.84 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
46. RPL37 ENSGALG00000014833 358.19 2882.84 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
47. RPS16 ENSGALG00000026490 358.19 2882.84 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPL36 ENSGALG00000000474 347.66 2798.09 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. RPS10 ENSGALG00000002813 347.66 2798.09 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
50. RPS14 ENSGALG00000004588 347.66 2798.09 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
51. RPS24 ENSGALG00000004871 347.66 2798.09 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
52. ATP6V0C ENSGALG00000009229 337.12 2713.26 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
53. ENSGALG00000028992 ENSGALG00000028992 337.12 2713.26
54. RPL31 ENSGALG00000016775 337.12 2713.26 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
55. RPL27 ENSGALG00000002837 326.59 2628.51 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
56. RPS20 ENSGALG00000014432 326.59 2628.51 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
57. SLC25A6_1 ENSGALG00000016691 326.59 2628.51 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. CIRBP ENSGALG00000030918 316.05 2543.68 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
59. H3-IX H3-IX 316.05 2543.68
60. MDK ENSGALG00000008367 305.52 2458.93 midkine [Source:NCBI gene;Acc:423196]
61. RPL21 ENSGALG00000027035 305.52 2458.93 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPLP1 ENSGALG00000030878 305.52 2458.93 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
63. ATP5G3 294.98 2374.10 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
64. CCT6 CCT6 294.98 2374.10
65. RPL27A ENSGALG00000005948 294.98 2374.10 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
66. RPS27A ENSGALG00000036790 294.98 2374.10 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
67. ANP32B ENSGALG00000037483 284.45 2289.35 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. RPL6 ENSGALG00000004818 284.45 2289.35 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RAN ENSGALG00000002569 273.91 2204.52 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
70. RPL35A ENSGALG00000007611, ENSGALG00000041230 273.91 2204.52 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
71. RPS8 ENSGALG00000010124 273.91 2204.52 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
72. RPS15 ENSGALG00000015195 263.38 2119.77 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
73. RPL38 ENSGALG00000001465 252.84 2034.94 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. RPSA 252.84 2034.94 ribosomal protein SA
75. CRHOA CRHOA 242.31 1950.19
76. EIF4A3 ENSGALG00000008530 242.31 1950.19 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
77. RPL10A ENSGALG00000002644 242.31 1950.19 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. RPL32 ENSGALG00000027142 242.31 1950.19 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
79. EIF1 ENSGALG00000028517 231.77 1865.37 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
80. FKBP4 ENSGALG00000014331 231.77 1865.37 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
81. HMGN5 ENSGALG00000007131 231.77 1865.37 high mobility group nucleosome binding domain 5, transcript variant X1
82. HSP90AA1 ENSGALG00000033212 231.77 1865.37 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
83. MIF ENSGALG00000006326 231.77 1865.37 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
84. RPL23A ENSGALG00000003966 231.77 1865.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
85. BTF3L4 ENSGALG00000010570 221.24 1780.62 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
86. EIF5A2 ENSGALG00000009309 221.24 1780.62 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
87. IGF2BP3 ENSGALG00000010961 221.24 1780.62 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
88. PGK1 ENSGALG00000007936 221.24 1780.62 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
89. RPL13 ENSGALG00000006179 210.70 1695.79 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
90. NDUFB9 ENSGALG00000042242 200.17 1611.04 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
91. SUB1 ENSGALG00000003248 200.17 1611.04 SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
92. DDX3X ENSGALG00000016231 189.63 1526.21 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
93. HNRNPA3 ENSGALG00000009250 189.63 1526.21 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
94. KPNA2 ENSGALG00000003584 189.63 1526.21 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
95. OAZ OAZ 189.63 1526.21
96. PDIA6 ENSGALG00000016447 189.63 1526.21 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
97. SNRPE ENSGALG00000000137 189.63 1526.21 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
98. TCF12 ENSGALG00000004304 189.63 1526.21 transcription factor 12 [Source:NCBI gene;Acc:396334]
99. TRAPPC2L ENSGALG00000006250 189.63 1526.21 trafficking protein particle complex 2 like [Source:HGNC Symbol;Acc:HGNC:30887]
100. BRIX1 ENSGALG00000003373 179.10 1441.46 BRX1, biogenesis of ribosomes [Source:NCBI gene;Acc:427433]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA