Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s9.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4135.78 33290.01
2. MT-ATP6 MT-ATP6 3479.78 28009.69
3. ENSGALG00000018384 ENSGALG00000018384 2923.67 23533.41
4. MT-ND5 MT-ND5 2683.40 21599.41
5. EEF1A EEF1A 2192.07 17644.56
6. MT-CYB MT-CYB 1919.41 15449.85
7. MT-ND4 MT-ND4 1876.22 15102.20
8. gga-mir-3527 gga-mir-3527 1644.06 13233.48
9. MT-CO1 MT-CO1 1471.28 11842.73
10. GAPDH ENSGALG00000014442 1274.21 10256.46 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND1 MT-ND1 1263.41 10169.53
12. gga-mir-3533 ENSGALG00000027736 1117.63 8996.11 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. NME2 ENSGALG00000002932 858.47 6910.06 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPL26 RPL26 742.39 5975.70
15. MT-ND3 MT-ND3 726.19 5845.30
16. PPIA ENSGALG00000028600 699.20 5628.05 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPL5 ENSGALG00000005922 693.80 5584.58 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPS3 ENSGALG00000017330 642.50 5171.66 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL8 ENSGALG00000016232 631.71 5084.80 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. TMSB4X ENSGALG00000026383 626.31 5041.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RAN ENSGALG00000002569 523.72 4215.56 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
22. RPS23 ENSGALG00000015617 518.32 4172.10 ribosomal protein S23
23. RPL27A ENSGALG00000005948 512.92 4128.63 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL7A ENSGALG00000003197 510.22 4106.90 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. RPS6 ENSGALG00000015082 499.43 4020.05 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
26. RPS7 ENSGALG00000016392 496.73 3998.31 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. CIRBP ENSGALG00000030918 475.13 3824.45 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. ENO1 ENSGALG00000002377 467.03 3759.25 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. RPS20 ENSGALG00000014432 464.33 3737.52 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
30. MT-ND2 MT-ND2 456.23 3672.32
31. RPL23 ENSGALG00000001634 453.53 3650.59 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPL31 ENSGALG00000016775 453.53 3650.59 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
33. RPL7 ENSGALG00000035252 453.53 3650.59 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
34. RPL21 ENSGALG00000027035 445.43 3585.39 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
35. RPS27A ENSGALG00000036790 445.43 3585.39 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPS10 ENSGALG00000002813 434.64 3498.53 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
37. RPL15 ENSGALG00000011290 429.24 3455.07 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
38. RPS4 RPS4 423.84 3411.60
39. RPS15A ENSGALG00000006771 418.44 3368.14 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. LDHB ENSGALG00000035836 404.94 3259.47 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
41. RPL27 ENSGALG00000002837 402.24 3237.74 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. HMGN5 ENSGALG00000007131 391.44 3150.81 high mobility group nucleosome binding domain 5, transcript variant X1
43. RPS29 ENSGALG00000012229 388.74 3129.07 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
44. RPL18A 386.04 3107.34 ribosomal protein L18a
45. CRABP-I ENSGALG00000003193 375.24 3020.41 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
46. STMN1 ENSGALG00000001475 375.24 3020.41 stathmin 1 [Source:NCBI gene;Acc:396057]
47. EIF4G2 ENSGALG00000005587 372.54 2998.68 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
48. ENSGALG00000028992 ENSGALG00000028992 369.84 2976.94
49. RPS16 ENSGALG00000026490 350.95 2824.89 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. MDK ENSGALG00000008367 340.15 2737.96 midkine [Source:NCBI gene;Acc:423196]
51. RPS11 ENSGALG00000017299 340.15 2737.96 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
52. ENSGALG00000018386 ENSGALG00000018386 326.65 2629.29
53. RPS12 ENSGALG00000013990 321.25 2585.83 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. RPSA 321.25 2585.83 ribosomal protein SA
55. RPL14 ENSGALG00000043379 315.85 2542.36 ribosomal protein L14
56. RPS24 ENSGALG00000004871 313.15 2520.63 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
57. EEF1B2 ENSGALG00000008590 310.45 2498.90 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
58. H2AFZ ENSGALG00000014023 310.45 2498.90 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
59. RPS14 ENSGALG00000004588 310.45 2498.90 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. SNRPG ENSGALG00000028409 302.36 2433.78 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
61. RPL6 ENSGALG00000004818 299.66 2412.04 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
62. RPS15 ENSGALG00000015195 296.96 2390.31 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. RPL23A ENSGALG00000003966 294.26 2368.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
64. H3-IX H3-IX 288.86 2325.11
65. MIF ENSGALG00000006326 288.86 2325.11 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
66. ATP6V0C ENSGALG00000009229 286.16 2303.38 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
67. RPL32 ENSGALG00000027142 286.16 2303.38 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. SLC25A6_1 ENSGALG00000016691 286.16 2303.38 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
69. RPL36 ENSGALG00000000474 269.96 2172.98 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. RPL38 ENSGALG00000001465 269.96 2172.98 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
71. RPL10A ENSGALG00000002644 267.26 2151.25 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
72. RPLP1 ENSGALG00000030878 264.56 2129.52 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
73. RPL4 ENSGALG00000007711 251.06 2020.85 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
74. RPS3A ENSGALG00000010077 240.26 1933.92 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
75. PRDX1 ENSGALG00000010243 234.87 1890.53 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
76. ATP5G3 229.47 1847.07 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. RPLP2 ENSGALG00000034811 229.47 1847.07 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
78. HNRNPDL ENSGALG00000023199 226.77 1825.33 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
79. RPL13 ENSGALG00000006179 221.37 1781.87 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
80. TCEB3 ENSGALG00000034625 221.37 1781.87 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. ENSGALG00000002696 ENSGALG00000002696 218.67 1760.13
82. RPL12 ENSGALG00000008806 215.97 1738.40 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
83. RPS21 ENSGALG00000005338 210.57 1694.93 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
84. EIF4EBP1 ENSGALG00000003205 207.87 1673.20 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
85. HMGB1 ENSGALG00000042875 205.17 1651.47 high mobility group box 1 [Source:NCBI gene;Acc:395724]
86. RPL36AL ENSGALG00000004952 205.17 1651.47 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
87. SNRPE ENSGALG00000000137 205.17 1651.47 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
88. RPL35A ENSGALG00000007611, ENSGALG00000041230 202.47 1629.74 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
89. HSPE1 ENSGALG00000009070 199.77 1608.00 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
90. KPNA2 ENSGALG00000003584 199.77 1608.00 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
91. RPL3 ENSGALG00000012172 191.67 1542.80 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
92. EIF1 ENSGALG00000028517 188.97 1521.07 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
93. NDUFB9 ENSGALG00000042242 188.97 1521.07 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
94. RPL35 ENSGALG00000035677 186.27 1499.34 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
95. TXN ENSGALG00000015704 183.57 1477.60 thioredoxin [Source:NCBI gene;Acc:396437]
96. RPL19 ENSGALG00000001658 180.87 1455.87 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
97. CDK1 ENSGALG00000003085 178.17 1434.14 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
98. RPL9 ENSGALG00000000150 175.47 1412.41 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
99. ERH ENSGALG00000017384 172.77 1390.67 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
100. RPL37 ENSGALG00000014833 172.77 1390.67 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA