Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s34.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4616.14 37157.66
2. MT-ND5 MT-ND5 3783.64 30456.44
3. MT-ATP6 MT-ATP6 3641.97 29316.07
4. EEF1A EEF1A 2288.97 18425.08
5. MT-CYB MT-CYB 2212.56 17810.02
6. gga-mir-3533 ENSGALG00000027736 2058.16 16567.18 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. gga-mir-3527 gga-mir-3527 2039.06 16413.43
8. MT-CO1 MT-CO1 1961.06 15785.57
9. MT-ND1 MT-ND1 1949.92 15695.90
10. MT-ND4 MT-ND4 1898.98 15285.86
11. ENSGALG00000018384 ENSGALG00000018384 1239.99 9981.31
12. MT-ND3 MT-ND3 1197.01 9635.34
13. GAPDH ENSGALG00000014442 1010.77 8136.20 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. NME2 ENSGALG00000002932 854.78 6880.56 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 786.33 6329.57 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. PPIA ENSGALG00000028600 764.05 6150.23 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. MDK ENSGALG00000008367 630.34 5073.93 midkine [Source:NCBI gene;Acc:423196]
18. RPL26 RPL26 574.63 4625.49
19. RPL8 ENSGALG00000016232 539.61 4343.60 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. TMSB4X ENSGALG00000026383 501.41 4036.10 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPL15 ENSGALG00000011290 477.53 3843.88 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL7 ENSGALG00000035252 458.43 3690.14 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPS10 ENSGALG00000002813 437.74 3523.59 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
24. RPL27A ENSGALG00000005948 423.41 3408.24 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. STMN1 ENSGALG00000001475 421.82 3395.44 stathmin 1 [Source:NCBI gene;Acc:396057]
26. CIRBP ENSGALG00000030918 418.64 3369.85 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. MT-ND2 MT-ND2 412.27 3318.57
28. RPS3 ENSGALG00000017330 410.68 3305.77 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
29. RPL23 ENSGALG00000001634 386.80 3113.55 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPL31 ENSGALG00000016775 386.80 3113.55 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
31. RPS7 ENSGALG00000016392 374.07 3011.08 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. RPL7A ENSGALG00000003197 369.29 2972.60 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. EIF4G2 ENSGALG00000005587 361.33 2908.53 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
34. RPL21 ENSGALG00000027035 354.96 2857.25 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
35. RPS23 ENSGALG00000015617 354.96 2857.25 ribosomal protein S23
36. RPS27A ENSGALG00000036790 348.60 2806.06 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. RPS24 ENSGALG00000004871 347.01 2793.26 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
38. RPS15A ENSGALG00000006771 340.64 2741.98 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
39. RPS16 ENSGALG00000026490 340.64 2741.98 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. RPS11 ENSGALG00000017299 337.46 2716.39 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPS6 ENSGALG00000015082 331.09 2665.11 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
42. ENO1 ENSGALG00000002377 329.50 2652.31 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
43. RPS20 ENSGALG00000014432 324.72 2613.84 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. H3-IX H3-IX 323.13 2601.04
45. ATP6V0C ENSGALG00000009229 318.35 2562.56 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
46. RAN ENSGALG00000002569 313.58 2524.16 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
47. RPL4 ENSGALG00000007711 308.80 2485.69 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
48. RPL27 ENSGALG00000002837 307.21 2472.89 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPL18A 299.25 2408.82 ribosomal protein L18a
50. RPSA 299.25 2408.82 ribosomal protein SA
51. EEF1B2 ENSGALG00000008590 296.07 2383.22 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. CRHOA CRHOA 294.48 2370.42
53. SLC25A6_1 ENSGALG00000016691 292.89 2357.62 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. ENSGALG00000028992 ENSGALG00000028992 280.15 2255.07
55. MEIS2 ENSGALG00000039118 272.19 2191.00 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
56. RPS29 ENSGALG00000012229 272.19 2191.00 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
57. RPL14 ENSGALG00000043379 270.60 2178.20 ribosomal protein L14
58. RPS3A ENSGALG00000010077 267.42 2152.60 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
59. ENSGALG00000018386 ENSGALG00000018386 259.46 2088.53
60. RPL32 ENSGALG00000027142 259.46 2088.53 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
61. RPL23A ENSGALG00000003966 253.09 2037.25 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
62. RPLP1 ENSGALG00000030878 246.72 1985.97 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
63. RPS14 ENSGALG00000004588 245.13 1973.18 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. TPT1 ENSGALG00000028872 245.13 1973.18 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
65. RPS4 RPS4 243.54 1960.38
66. RPL13 ENSGALG00000006179 241.95 1947.58 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
67. HMGN5 ENSGALG00000007131 240.36 1934.78 high mobility group nucleosome binding domain 5, transcript variant X1
68. RPL6 ENSGALG00000004818 240.36 1934.78 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. CALM CALM 233.99 1883.50
70. LUM ENSGALG00000011271 232.40 1870.71 lumican [Source:NCBI gene;Acc:417891]
71. RPL38 ENSGALG00000001465 232.40 1870.71 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
72. RPS15 ENSGALG00000015195 229.22 1845.11 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
73. ATP5G3 222.85 1793.83 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. PRDX1 ENSGALG00000010243 221.26 1781.03 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
75. RPS12 ENSGALG00000013990 214.89 1729.76 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
76. ENSGALG00000002696 ENSGALG00000002696 211.71 1704.16
77. RPL36 ENSGALG00000000474 211.71 1704.16 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. CNN3 ENSGALG00000005597 206.93 1665.68 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
79. RPL10A ENSGALG00000002644 205.34 1652.89 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. YWHAZ ENSGALG00000031387 203.75 1640.09 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
81. EIF1 ENSGALG00000028517 202.15 1627.21 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
82. RPL36AL ENSGALG00000004952 198.97 1601.61 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
83. SNRPG ENSGALG00000028409 198.97 1601.61 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
84. RPL3 ENSGALG00000012172 197.38 1588.81 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
85. ALDH1A2 ENSGALG00000004270 195.79 1576.01 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
86. RPS21 ENSGALG00000005338 192.60 1550.34 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
87. RPL12 ENSGALG00000008806 191.01 1537.54 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
88. RPS8 ENSGALG00000010124 187.83 1511.94 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
89. EIF3F ENSGALG00000005326 181.46 1460.66 eukaryotic translation initiation factor 3 subunit F
90. EIF4EBP1 ENSGALG00000003205 178.28 1435.07 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
91. H2AFZ ENSGALG00000014023 173.50 1396.59 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
92. RPL9 ENSGALG00000000150 171.91 1383.79 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
93. HSPA8 ENSGALG00000006512 170.32 1370.99 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
94. LDHB ENSGALG00000035836 170.32 1370.99 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
95. RPLP2 ENSGALG00000034811 168.73 1358.19 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
96. EEF1D 167.14 1345.39 eukaryotic translation elongation factor 1 delta, transcript variant X13
97. HNRNPDL ENSGALG00000023199 165.54 1332.52 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
98. BTF3L4 ENSGALG00000010570 160.77 1294.12 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
99. COL1A2 ENSGALG00000009641 160.77 1294.12 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
100. RPL35A ENSGALG00000007611, ENSGALG00000041230 160.77 1294.12 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA