Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SHF

Gene Name Gene ID Reads Annotation
SHF SHF 92










Genes with expression patterns similar to SHF

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. SHF SHF 92 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. MAGI3 MAGI3 114 2.753 0.935 0.912 - - - - 0.906 - -
3. zgc:114046 ENSDARG00000091728 68 2.698 0.845 0.948 - - - - 0.905 - - zgc:114046 [Source:ZFIN;Acc:ZDB-GENE-050320-24]
4. pdxka ENSDARG00000088959 217 2.554 0.894 0.819 - - - 0.841 - - - pyridoxal (pyridoxine, vitamin B6) kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-8376]
5. kdm5bb ENSDARG00000003098 531 2.526 - 0.828 - - - 0.880 0.818 - - lysine (K)-specific demethylase 5Bb [Source:ZFIN;Acc:ZDB-GENE-030424-1]
6. sesn2 ENSDARG00000070012 294 2.284 - 0.701 - - - 0.866 0.717 - - sestrin 2 [Source:ZFIN;Acc:ZDB-GENE-070108-1]
7. CU367845.1_1 CU367845.1_1 43 1.89 0.954 0.936 - - - - - - -
8. si:dkeyp-30e7.2 ENSDARG00000094387 87 1.884 0.923 - - - - 0.961 - - - si:dkeyp-30e7.2 [Source:ZFIN;Acc:ZDB-GENE-081104-498]
9. slc41a1 ENSDARG00000070214, ENSDARG00000114707 20 1.878 0.939 0.939 - - - - - - - solute carrier family 41 (magnesium transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4700]
10. ndufs8b ENSDARG00000057055 10 1.875 0.939 0.936 - - - - - - - NADH:ubiquinone oxidoreductase core subunit S8b [Source:ZFIN;Acc:ZDB-GENE-050522-131]
11. HIST1H4J HIST1H4J 31 1.858 - 0.931 - - - - 0.927 - -
12. ptgis ENSDARG00000060094, ENSDARG00000113227 82 1.81 - - - - - 0.942 0.868 - - prostaglandin I2 (prostacyclin) synthase [Source:ZFIN;Acc:ZDB-GENE-070116-1]
13. CU570684.5 CU570684.5 55 1.793 - 0.880 - - - - 0.913 - -
14. eno1b ENSDARG00000013750 63 1.785 - - - - - 0.889 0.896 - - enolase 1b, (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-1651]
15. cyb5d2 ENSDARG00000061006, ENSDARG00000109422 75 1.775 0.896 - - - - 0.879 - - - cytochrome b5 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050506-83]
16. ttc5 ENSDARG00000013329, ENSDARG00000113967 219 1.766 - 0.943 - - - 0.823 - - - tetratricopeptide repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-050417-137]
17. si:dkeyp-13a3.9 si:dkeyp-13a3.9 362 1.759 0.931 0.828 - - - - - - -
18. dlx6a ENSDARG00000042291 185 1.751 - 0.824 - - - - 0.927 - - distal-less homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-980526-448]
19. AL929007.2 AL929007.2 117 1.742 0.937 - - - - 0.805 - - -
20. prkcbb ENSDARG00000022254 319 1.735 0.879 - - - - 0.856 - - - protein kinase C, beta b [Source:ZFIN;Acc:ZDB-GENE-040426-1178]
21. zgc:123297 ENSDARG00000056798, ENSDARG00000102158 62 1.735 0.945 - - - - 0.790 - - - zgc:123297 [Source:ZFIN;Acc:ZDB-GENE-051127-9]
22. si:ch211-171h4.7 ENSDARG00000088408 168 1.734 - 0.817 - - - - 0.917 - - si:ch211-171h4.7 [Source:ZFIN;Acc:ZDB-GENE-120215-25]
23. slc6a6a ENSDARG00000012534 183 1.727 - 0.915 - - - 0.812 - - - solute carrier family 6 (neurotransmitter transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-081104-1]
24. lrrc24 ENSDARG00000101704 224 1.716 - - - - - 0.774 0.942 - - leucine rich repeat containing 24 [Source:ZFIN;Acc:ZDB-GENE-060503-496]
25. zgc:112038 ENSDARG00000046140 73 1.712 - 0.819 - - - - 0.893 - - zgc:112038 [Source:ZFIN;Acc:ZDB-GENE-050522-271]
26. agmo ENSDARG00000025595 42 1.7 - - - - - 0.897 0.803 - - alkylglycerol monooxygenase [Source:ZFIN;Acc:ZDB-GENE-040426-2207]
27. slc25a35 ENSDARG00000102783 129 1.696 - 0.913 - - - 0.783 - - - solute carrier family 25, member 35 [Source:ZFIN;Acc:ZDB-GENE-060526-142]
28. si:dkey-51d8.9 ENSDARG00000096217 47 1.679 - 0.843 - - - 0.836 - - - si:dkey-51d8.9 [Source:ZFIN;Acc:ZDB-GENE-110914-66]
29. cacng6a ENSDARG00000036457 344 1.675 0.936 - - - - - 0.739 - - calcium channel, voltage-dependent, gamma subunit 6a [Source:ZFIN;Acc:ZDB-GENE-060503-440]
30. SHISA8 SHISA8 58 1.674 - 0.895 - - - 0.779 - - -
31. HHIPL2 ENSDARG00000060008 162 1.661 - 0.788 - - - - 0.873 - - HHIP-like 2 [Source:ZFIN;Acc:ZDB-GENE-131120-145]
32. si:dkey-1b17.5 ENSDARG00000101425 130 1.661 - 0.936 - - - 0.725 - - - si:dkey-1b17.5 [Source:ZFIN;Acc:ZDB-GENE-050208-704]
33. gpr39 ENSDARG00000102888 46 1.651 - - - - - 0.805 0.846 - - G protein-coupled receptor 39 [Source:ZFIN;Acc:ZDB-GENE-040426-1395]
34. FAM84B ENSDARG00000032859, ENSDARG00000116831 127 1.649 - 0.943 0.706 - - - - - - family with sequence similarity 84, member B [Source:ZFIN;Acc:ZDB-GENE-060929-1130]
35. CENPT CENPT 330 1.645 0.886 - - - - 0.759 - - -
36. athl1 athl1 172 1.645 0.874 - - - - - 0.771 - -
37. ercc3 ENSDARG00000002402 340 1.636 - 0.836 - - - 0.800 - - - excision repair cross-complementation group 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3043]
38. nde1 ENSDARG00000103902 557 1.622 - 0.869 - - - - 0.753 - - nudE neurodevelopment protein 1 [Source:ZFIN;Acc:ZDB-GENE-050913-61]
39. GDPD4 GDPD4 513 1.62 - - - - - 0.895 0.725 - -
40. bmp7b ENSDARG00000063230 337 1.608 0.733 - - - - 0.875 - - - bone morphogenetic protein 7b [Source:ZFIN;Acc:ZDB-GENE-060929-328]
41. OSBPL3 OSBPL3 145 1.607 0.853 - - - - - 0.754 - -
42. ptrh2 ENSDARG00000077339, ENSDARG00000111027 211 1.606 0.878 0.728 - - - - - - - peptidyl-tRNA hydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-050522-163]
43. aldh3b1 ENSDARG00000013839 796 1.587 0.757 - - - - 0.830 - - - aldehyde dehydrogenase 3 family, member B1 [Source:ZFIN;Acc:ZDB-GENE-021120-3]
44. irs1 ENSDARG00000054087 1809 1.587 0.741 - - - - - 0.846 - - insulin receptor substrate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-872]
45. si:ch211-199m9.3 50 1.585 - 0.730 - - - 0.855 - - - si:ch211-199m9.3, transcript variant X3
46. dusp7 ENSDARG00000101413 1307 1.58 - 0.728 - - - - 0.852 - - dual specificity phosphatase 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5457]
47. inpp5f ENSDARG00000061437 1228 1.573 - - - - - 0.758 0.815 - - inositol polyphosphate-5-phosphatase F [Source:ZFIN;Acc:ZDB-GENE-041111-194]
48. CLN5 ENSDARG00000076339 377 1.573 0.745 0.828 - - - - - - - CLN5, intracellular trafficking protein [Source:ZFIN;Acc:ZDB-GENE-060908-1]
49. znhit2 ENSDARG00000030805 197 1.557 - 0.845 - - - 0.712 - - - zinc finger, HIT-type containing 2 [Source:ZFIN;Acc:ZDB-GENE-061103-46]
50. TBC1D24 ENSDARG00000069339 1300 1.553 0.835 - - - - - 0.718 - - TBC1 domain family, member 24 [Source:ZFIN;Acc:ZDB-GENE-050809-65]
51. mir203a 1519 1.542 - 0.810 - - - 0.732 - - - microRNA 203a
52. acot7 ENSDARG00000018653 693 1.54 0.808 - - - - - 0.732 - - acyl-CoA thioesterase 7 [Source:ZFIN;Acc:ZDB-GENE-040912-42]
53. csrp2bp 2642 1.536 - 0.827 - - - 0.709 - - - csrp2 binding protein
54. napepld ENSDARG00000009252 228 1.534 - - 0.744 - - - 0.790 - - N-acyl phosphatidylethanolamine phospholipase D [Source:ZFIN;Acc:ZDB-GENE-030131-3856]
55. tfcp2 ENSDARG00000060306 1024 1.533 - 0.801 - - - 0.732 - - - transcription factor CP2 [Source:ZFIN;Acc:ZDB-GENE-030131-2523]
56. dnajb6b ENSDARG00000020953, ENSDARG00000110048 446 1.529 0.808 0.721 - - - - - - - DnaJ (Hsp40) homolog, subfamily B, member 6b [Source:ZFIN;Acc:ZDB-GENE-040426-1122]
57. PDGFC ENSDARG00000077588 1064 1.528 0.790 0.738 - - - - - - - platelet derived growth factor c [Source:ZFIN;Acc:ZDB-GENE-071217-2]
58. aamdc ENSDARG00000103957 173 1.522 0.817 - - - - - 0.705 - - adipogenesis associated, Mth938 domain containing [Source:ZFIN;Acc:ZDB-GENE-050522-64]
59. kdm2bb ENSDARG00000046010 747 1.514 - 0.728 - - - 0.786 - - - lysine (K)-specific demethylase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080225-13]
60. cstf1 ENSDARG00000044820 1663 1.482 0.759 0.723 - - - - - - - cleavage stimulation factor, 3' pre-RNA, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2958]
61. MAD2L2_1 MAD2L2_1 705 1.475 0.768 - - - - - 0.707 - -
62. uevld ENSDARG00000009266, ENSDARG00000116754 377 1.472 0.753 - - - - - 0.719 - - UEV and lactate/malate dehyrogenase domains [Source:ZFIN;Acc:ZDB-GENE-040801-138]
63. si:ch211-148l7.4 ENSDARG00000094469 221 1.463 - - - - - 0.708 0.755 - - si:ch211-148l7.4 [Source:ZFIN;Acc:ZDB-GENE-090313-38]
64. cryz ENSDARG00000016074 322 1.445 - 0.713 - - - 0.732 - - - crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
65. sorbs2a ENSDARG00000003046 242 1 - 1.000 - - - - - - - sorbin and SH3 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-070308-2]
66. zgc:174563 zgc:174563 198 0.991 0.991 - - - - - - - -
67. si:ch211-215p11.4 si:ch211-215p11.4 67 0.988 0.988 - - - - - - - -
68. MPPED1 ENSDARG00000088181 117 0.985 - 0.985 - - - - - - - metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]
69. CU856539.2 ENSDARG00000058946 6 0.977 - - - - - 0.977 - - - myosin-IIIb [Source:NCBI gene;Acc:556989]
70. MTBP ENSDARG00000090447 174 0.976 0.976 - - - - - - - - MDM2 binding protein [Source:ZFIN;Acc:ZDB-GENE-120724-1]
71. zgc:110821 ENSDARG00000077085 210 0.973 - 0.973 - - - - - - - zgc:110821 [Source:ZFIN;Acc:ZDB-GENE-050227-8]
72. SNORA31 SNORA31 23 0.973 - - - - - 0.973 - - -
73. FGFBP2 FGFBP2 16 0.973 - - - - - 0.973 - - -
74. DNAJB14 ENSDARG00000069996 144 0.972 - 0.972 - - - - - - - DnaJ (Hsp40) homolog, subfamily B, member 14 [Source:ZFIN;Acc:ZDB-GENE-061110-138]
75. zgc:195633 19 0.972 0.972 - - - - - - - - zgc:195633
76. epsti1 ENSDARG00000094578 33 0.97 - - - - - 0.970 - - - epithelial stromal interaction 1 [Source:ZFIN;Acc:ZDB-GENE-081104-172]
77. slc35d1b ENSDARG00000027986 138 0.965 0.965 - - - - - - - - solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1b [Source:ZFIN;Acc:ZDB-GENE-040426-1213]
78. acbd4 ENSDARG00000027070 52 0.964 0.964 - - - - - - - - acyl-CoA binding domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2074]
79. cbln2a ENSDARG00000074601 12 0.964 - - - - - - 0.964 - - cerebellin 2a precursor [Source:ZFIN;Acc:ZDB-GENE-070912-591]
80. cadpsa ENSDARG00000043661 160 0.961 - - - - - - 0.961 - - Ca2+-dependent activator protein for secretion a [Source:ZFIN;Acc:ZDB-GENE-030616-525]
81. APOBEC2 APOBEC2 9 0.96 - 0.960 - - - - - - -
82. nceh1a ENSDARG00000020427 35 0.96 - 0.960 - - - - - - - neutral cholesterol ester hydrolase 1a [Source:ZFIN;Acc:ZDB-GENE-040711-2]
83. casp3b ENSDARG00000055045 54 0.958 0.958 - - - - - - - - caspase 3, apoptosis-related cysteine peptidase b [Source:ZFIN;Acc:ZDB-GENE-070607-1]
84. invs ENSDARG00000002213 261 0.957 - - - - - 0.957 - - - inversin [Source:ZFIN;Acc:ZDB-GENE-020507-2]
85. si:ch211-197n1.2 58 0.957 - 0.957 - - - - - - - si:ch211-197n1.2, transcript variant X1
86. CDH8 172 0.956 - - - - - - 0.956 - - cadherin 8
87. ppp1r12c ENSDARG00000052423 183 0.955 0.955 - - - - - - - - protein phosphatase 1, regulatory subunit 12C [Source:ZFIN;Acc:ZDB-GENE-010724-11]
88. tnxb 30 0.955 - - - - - 0.955 - - - tenascin XB
89. TRIM14_3 TRIM14_3 7 0.954 0.954 - - - - - - - -
90. large 9 0.954 0.954 - - - - - - - - like-glycosyltransferase, transcript variant X1
91. si:ch211-89f22.1 si:ch211-89f22.1 11 0.954 0.954 - - - - - - - -
92. BICD2_1 BICD2_1 18 0.954 0.954 - - - - - - - -
93. CLCN2 CLCN2 8 0.954 0.954 - - - - - - - -
94. scn3b ENSDARG00000062359 242 0.954 - - - - - - 0.954 - - sodium channel, voltage-gated, type III, beta [Source:ZFIN;Acc:ZDB-GENE-070920-2]
95. si:dkey-88e10.2 si:dkey-88e10.2 7 0.954 0.954 - - - - - - - -
96. si:ch211-92l17.1 ENSDARG00000094584 18 0.954 0.954 - - - - - - - - si:ch211-92l17.1 [Source:ZFIN;Acc:ZDB-GENE-041210-113]
97. si:ch211-165f21.6 si:ch211-165f21.6 5 0.954 0.954 - - - - - - - -
98. AGO3 AGO3 12 0.954 0.954 - - - - - - - -
99. xpnpep2 ENSDARG00000026017 16 0.954 0.954 - - - - - - - - X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound [Source:ZFIN;Acc:ZDB-GENE-040426-1151]
100. si:ch211-145h19.2 7 0.954 0.954 - - - - - - - - si:ch211-145h19.2

There are 1358 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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