Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HOXD3

Gene Name Gene ID Reads Annotation
HOXD3 ENSG00000128652 1324 homeobox D3 [Source:HGNC Symbol;Acc:HGNC:5137]



Genes with expression patterns similar to HOXD3

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. HOXD3 ENSG00000128652 1324 2 1.000 1.000 homeobox D3 [Source:HGNC Symbol;Acc:HGNC:5137]
2. DPYSL5 ENSG00000157851 6855 0.878 - 0.878 dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]
3. CKB ENSG00000166165 54181 0.873 - 0.873 creatine kinase B [Source:HGNC Symbol;Acc:HGNC:1991]
4. NES ENSG00000132688 20034 0.865 - 0.865 nestin [Source:HGNC Symbol;Acc:HGNC:7756]
5. HOXC9 ENSG00000180806 3191 0.856 - 0.856 homeobox C9 [Source:HGNC Symbol;Acc:HGNC:5130]
6. NRARP ENSG00000198435 1658 0.855 - 0.855 NOTCH regulated ankyrin repeat protein [Source:HGNC Symbol;Acc:HGNC:33843]
7. SOX3 ENSG00000134595 5297 0.848 - 0.848 SRY-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]
8. POU3F2 ENSG00000184486 2683 0.846 - 0.846 POU class 3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9215]
9. ADD2 ENSG00000075340 810 0.844 - 0.844 adducin 2 [Source:HGNC Symbol;Acc:HGNC:244]
10. CELSR2 ENSG00000143126 3566 0.842 - 0.842 cadherin EGF LAG seven-pass G-type receptor 2 [Source:HGNC Symbol;Acc:HGNC:3231]
11. CXCR4 ENSG00000121966 4708 0.842 - 0.842 C-X-C motif chemokine receptor 4 [Source:HGNC Symbol;Acc:HGNC:2561]
12. ASRGL1 ENSG00000162174 4293 0.836 - 0.836 asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
13. COTL1 ENSG00000103187 30280 0.834 - 0.834 coactosin like F-actin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:18304]
14. LOC100240734 1898 0.833 - 0.833 uncharacterized LOC100240734
15. RHBDL3 ENSG00000141314 2571 0.833 - 0.833 rhomboid like 3 [Source:HGNC Symbol;Acc:HGNC:16502]
16. KLHDC8A ENSG00000162873 2265 0.83 - 0.830 kelch domain containing 8A [Source:HGNC Symbol;Acc:HGNC:25573]
17. LINC01158 1332 0.83 - 0.830 long intergenic non-protein coding RNA 1158, transcript variant 4
18. SRGAP3 ENSG00000196220 5297 0.829 - 0.829 SLIT-ROBO Rho GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:19744]
19. DTX4 ENSG00000110042 2639 0.827 - 0.827 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
20. TUBB2B ENSG00000137285 35642 0.825 - 0.825 tubulin beta 2B class IIb [Source:HGNC Symbol;Acc:HGNC:30829]
21. SEMA5B ENSG00000082684 2716 0.824 - 0.824 semaphorin 5B [Source:HGNC Symbol;Acc:HGNC:10737]
22. TTYH1 ENSG00000167614, ENSG00000275650, ENSG00000276537, ENSG00000276887 2414 0.823 - 0.823 tweety family member 1 [Source:HGNC Symbol;Acc:HGNC:13476]
23. MSI1 ENSG00000135097 6935 0.822 - 0.822 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
24. SYT11 ENSG00000132718 3832 0.821 - 0.821 synaptotagmin 11 [Source:HGNC Symbol;Acc:HGNC:19239]
25. HES5 ENSG00000197921, ENSG00000273529 9293 0.818 - 0.818 hes family bHLH transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:19764]
26. MYO16 ENSG00000041515, ENSG00000282848 506 0.816 - 0.816 myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
27. DPYSL2 ENSG00000092964 47074 0.814 - 0.814 dihydropyrimidinase like 2 [Source:HGNC Symbol;Acc:HGNC:3014]
28. SOX2 ENSG00000181449 19791 0.814 - 0.814 SRY-box 2 [Source:HGNC Symbol;Acc:HGNC:11195]
29. HOXB-AS3 ENSG00000233101 1776 0.812 - 0.812 HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
30. RND2 ENSG00000108830 3761 0.807 - 0.807 Rho family GTPase 2 [Source:HGNC Symbol;Acc:HGNC:18315]
31. TSPAN18 ENSG00000157570 9391 0.805 - 0.805 tetraspanin 18 [Source:HGNC Symbol;Acc:HGNC:20660]
32. LINC00461 ENSG00000245526 4465 0.804 - 0.804 long intergenic non-protein coding RNA 461 [Source:HGNC Symbol;Acc:HGNC:42810]
33. MYCL ENSG00000116990 1128 0.804 - 0.804 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
34. FAM181A ENSG00000140067, ENSG00000273533 1757 0.804 - 0.804 family with sequence similarity 181 member A [Source:HGNC Symbol;Acc:HGNC:20491]
35. CSPG5 ENSG00000114646 558 0.803 - 0.803 chondroitin sulfate proteoglycan 5 [Source:HGNC Symbol;Acc:HGNC:2467]
36. MIR124-2HG ENSG00000254377 940 0.803 - 0.803 MIR124-2 host gene [Source:HGNC Symbol;Acc:HGNC:48723]
37. NHLH1 ENSG00000171786 4811 0.802 - 0.802 nescient helix-loop-helix 1 [Source:HGNC Symbol;Acc:HGNC:7817]
38. TAGLN3 ENSG00000144834 10185 0.8 - 0.800 transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
39. KLHL35 ENSG00000149243 877 0.8 - 0.800 kelch like family member 35 [Source:HGNC Symbol;Acc:HGNC:26597]
40. RGMA ENSG00000182175 3405 0.799 - 0.799 repulsive guidance molecule BMP co-receptor a [Source:HGNC Symbol;Acc:HGNC:30308]
41. UCP2 ENSG00000175567 1141 0.798 - 0.798 uncoupling protein 2 [Source:HGNC Symbol;Acc:HGNC:12518]
42. MAP1B ENSG00000131711 44568 0.796 - 0.796 microtubule associated protein 1B [Source:HGNC Symbol;Acc:HGNC:6836]
43. IRX5 ENSG00000176842 2175 0.796 - 0.796 iroquois homeobox 5 [Source:HGNC Symbol;Acc:HGNC:14361]
44. LRIG1 ENSG00000144749, ENSG00000282243 1639 0.794 - 0.794 leucine rich repeats and immunoglobulin like domains 1 [Source:HGNC Symbol;Acc:HGNC:17360]
45. PTPRZ1 ENSG00000106278 1326 0.792 - 0.792 protein tyrosine phosphatase, receptor type Z1 [Source:HGNC Symbol;Acc:HGNC:9685]
46. FAM219A ENSG00000164970 1747 0.791 - 0.791 family with sequence similarity 219 member A [Source:HGNC Symbol;Acc:HGNC:19920]
47. KLF13 ENSG00000169926, ENSG00000275746 3783 0.791 - 0.791 Kruppel like factor 13 [Source:NCBI gene;Acc:51621]
48. ST18 ENSG00000147488 547 0.785 - 0.785 ST18, C2H2C-type zinc finger [Source:HGNC Symbol;Acc:HGNC:18695]
49. B3GAT1 ENSG00000109956 652 0.784 - 0.784 beta-1,3-glucuronyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:921]
50. TMEM176B ENSG00000106565 1876 0.784 - 0.784 transmembrane protein 176B [Source:HGNC Symbol;Acc:HGNC:29596]
51. CBS ENSG00000160200 15678 0.784 - 0.784 cystathionine-beta-synthase [Source:HGNC Symbol;Acc:HGNC:1550]
52. PDPN ENSG00000162493 5095 0.784 - 0.784 podoplanin [Source:HGNC Symbol;Acc:HGNC:29602]
53. NCAN ENSG00000130287 1136 0.783 - 0.783 neurocan [Source:HGNC Symbol;Acc:HGNC:2465]
54. RGS16 ENSG00000143333 2239 0.782 - 0.782 regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]
55. FLJ12825 ENSG00000248265 822 0.781 - 0.781 uncharacterized LOC440101 [Source:NCBI gene;Acc:440101]
56. LFNG ENSG00000106003 1260 0.779 - 0.779 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:6560]
57. OLMALINC ENSG00000235823 4999 0.778 - 0.778 oligodendrocyte maturation-associated long intergenic non-coding RNA [Source:HGNC Symbol;Acc:HGNC:28060]
58. CCDC85C ENSG00000205476 3808 0.776 - 0.776 coiled-coil domain containing 85C [Source:HGNC Symbol;Acc:HGNC:35459]
59. CRABP1 ENSG00000166426 2178 0.775 - 0.775 cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2338]
60. IGFBPL1 ENSG00000137142 3283 0.774 - 0.774 insulin like growth factor binding protein like 1 [Source:HGNC Symbol;Acc:HGNC:20081]
61. SLC2A1 ENSG00000117394 2892 0.773 - 0.773 solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]
62. MIAT ENSG00000225783 2977 0.772 - 0.772 myocardial infarction associated transcript [Source:HGNC Symbol;Acc:HGNC:33425]
63. GLDC ENSG00000178445 513 0.772 - 0.772 glycine decarboxylase [Source:HGNC Symbol;Acc:HGNC:4313]
64. AGO1 ENSG00000092847 2525 0.771 - 0.771 argonaute 1, RISC catalytic component [Source:HGNC Symbol;Acc:HGNC:3262]
65. TMEM176A ENSG00000002933 854 0.771 - 0.771 transmembrane protein 176A [Source:HGNC Symbol;Acc:HGNC:24930]
66. SLC17A6 ENSG00000091664 75 0.77 - 0.770 solute carrier family 17 member 6 [Source:HGNC Symbol;Acc:HGNC:16703]
67. HOXB9 ENSG00000170689 2051 0.77 - 0.770 homeobox B9 [Source:HGNC Symbol;Acc:HGNC:5120]
68. MAP6 ENSG00000171533 1692 0.77 - 0.770 microtubule associated protein 6 [Source:HGNC Symbol;Acc:HGNC:6868]
69. SLC1A2 ENSG00000110436 1231 0.769 - 0.769 solute carrier family 1 member 2 [Source:HGNC Symbol;Acc:HGNC:10940]
70. INSM1 ENSG00000173404 3113 0.769 - 0.769 INSM transcriptional repressor 1 [Source:HGNC Symbol;Acc:HGNC:6090]
71. EPB41L4A ENSG00000129595 645 0.768 - 0.768 erythrocyte membrane protein band 4.1 like 4A [Source:HGNC Symbol;Acc:HGNC:13278]
72. HEYL ENSG00000163909 2647 0.768 - 0.768 hes related family bHLH transcription factor with YRPW motif-like [Source:HGNC Symbol;Acc:HGNC:4882]
73. FGF19 ENSG00000162344 241 0.766 - 0.766 fibroblast growth factor 19 [Source:HGNC Symbol;Acc:HGNC:3675]
74. NHLH2 ENSG00000177551 1191 0.766 - 0.766 nescient helix-loop-helix 2 [Source:HGNC Symbol;Acc:HGNC:7818]
75. BSN ENSG00000164061 737 0.766 - 0.766 bassoon presynaptic cytomatrix protein [Source:HGNC Symbol;Acc:HGNC:1117]
76. PHF21B ENSG00000056487 2704 0.763 - 0.763 PHD finger protein 21B [Source:HGNC Symbol;Acc:HGNC:25161]
77. FGFR3 ENSG00000068078 2862 0.763 - 0.763 fibroblast growth factor receptor 3 [Source:HGNC Symbol;Acc:HGNC:3690]
78. CAMKV ENSG00000164076 400 0.762 - 0.762 CaM kinase like vesicle associated [Source:HGNC Symbol;Acc:HGNC:28788]
79. ACOT7 ENSG00000097021 9034 0.76 - 0.760 acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
80. PLP1 ENSG00000123560 2266 0.76 - 0.760 proteolipid protein 1 [Source:HGNC Symbol;Acc:HGNC:9086]
81. ADGRG1 ENSG00000205336 800 0.76 - 0.760 adhesion G protein-coupled receptor G1 [Source:HGNC Symbol;Acc:HGNC:4512]
82. GREB1 ENSG00000196208 4256 0.76 - 0.760 growth regulating estrogen receptor binding 1 [Source:HGNC Symbol;Acc:HGNC:24885]
83. RGS20 ENSG00000147509 282 0.759 - 0.759 regulator of G protein signaling 20 [Source:HGNC Symbol;Acc:HGNC:14600]
84. ARL4C ENSG00000188042 5437 0.758 - 0.758 ADP ribosylation factor like GTPase 4C [Source:HGNC Symbol;Acc:HGNC:698]
85. CNIH2 ENSG00000174871 3037 0.758 - 0.758 cornichon family AMPA receptor auxiliary protein 2 [Source:HGNC Symbol;Acc:HGNC:28744]
86. CNTN2 ENSG00000184144 4674 0.755 - 0.755 contactin 2 [Source:HGNC Symbol;Acc:HGNC:2172]
87. NAV1 ENSG00000134369 4513 0.755 - 0.755 neuron navigator 1 [Source:HGNC Symbol;Acc:HGNC:15989]
88. PCDH8 ENSG00000136099 203 0.754 - 0.754 protocadherin 8 [Source:HGNC Symbol;Acc:HGNC:8660]
89. PAX6 ENSG00000007372 3710 0.754 - 0.754 paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
90. GPRC5B ENSG00000167191 684 0.753 - 0.753 G protein-coupled receptor class C group 5 member B [Source:HGNC Symbol;Acc:HGNC:13308]
91. MAP2 ENSG00000078018 3573 0.753 - 0.753 microtubule associated protein 2 [Source:HGNC Symbol;Acc:HGNC:6839]
92. DPYSL3 ENSG00000113657 7319 0.752 - 0.752 dihydropyrimidinase like 3 [Source:HGNC Symbol;Acc:HGNC:3015]
93. EEF2 ENSG00000167658 47680 0.749 - 0.749 eukaryotic translation elongation factor 2 [Source:HGNC Symbol;Acc:HGNC:3214]
94. GNG4 ENSG00000168243, ENSG00000282972 1085 0.748 - 0.748 G protein subunit gamma 4 [Source:HGNC Symbol;Acc:HGNC:4407]
95. PAK3 ENSG00000077264 890 0.747 - 0.747 p21 (RAC1) activated kinase 3 [Source:HGNC Symbol;Acc:HGNC:8592]
96. CHD7 ENSG00000171316 9450 0.746 - 0.746 chromodomain helicase DNA binding protein 7 [Source:HGNC Symbol;Acc:HGNC:20626]
97. HAGLROS ENSG00000226363 729 0.746 - 0.746 HAGLR opposite strand lncRNA [Source:HGNC Symbol;Acc:HGNC:50646]
98. FAM181B ENSG00000182103 461 0.746 - 0.746 family with sequence similarity 181 member B [Source:HGNC Symbol;Acc:HGNC:28512]
99. PEA15 ENSG00000162734 7392 0.745 - 0.745 proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]
100. PRR36 ENSG00000183248 485 0.745 - 0.745 proline rich 36 [Source:HGNC Symbol;Acc:HGNC:26172]

There are 74 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA