Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SOX1

Gene Name Gene ID Reads Annotation
SOX1 ENSG00000182968 1339 SRY-box 1 [Source:HGNC Symbol;Acc:HGNC:11189]



Genes with expression patterns similar to SOX1

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. SOX1 ENSG00000182968 1339 2 1.000 1.000 SRY-box 1 [Source:HGNC Symbol;Acc:HGNC:11189]
2. SYT2 ENSG00000143858 2364 1.887 0.919 0.968 synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
3. SCUBE2 ENSG00000175356 1730 1.884 0.952 0.932 signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
4. FZD10 ENSG00000111432 608 1.847 0.921 0.926 frizzled class receptor 10 [Source:HGNC Symbol;Acc:HGNC:4039]
5. ARL4A ENSG00000122644 3071 1.846 0.915 0.931 ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
6. SOX2 ENSG00000181449 19791 1.84 0.893 0.947 SRY-box 2 [Source:HGNC Symbol;Acc:HGNC:11195]
7. LINC00461 ENSG00000245526 4465 1.822 0.887 0.935 long intergenic non-protein coding RNA 461 [Source:HGNC Symbol;Acc:HGNC:42810]
8. TKTL1 ENSG00000007350 1212 1.821 0.907 0.914 transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]
9. HOXB-AS3 ENSG00000233101 1776 1.814 0.931 0.883 HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
10. PRDM13 ENSG00000112238 312 1.81 0.899 0.911 PR/SET domain 13 [Source:HGNC Symbol;Acc:HGNC:13998]
11. RND2 ENSG00000108830 3761 1.787 0.915 0.872 Rho family GTPase 2 [Source:HGNC Symbol;Acc:HGNC:18315]
12. CRABP1 ENSG00000166426 2178 1.775 0.902 0.873 cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2338]
13. POU3F2 ENSG00000184486 2683 1.769 0.855 0.914 POU class 3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9215]
14. WSCD1 ENSG00000179314 1121 1.755 0.830 0.925 WSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29060]
15. LFNG ENSG00000106003 1260 1.736 0.853 0.883 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:6560]
16. TOX3 ENSG00000103460 1758 1.731 0.877 0.854 TOX high mobility group box family member 3 [Source:HGNC Symbol;Acc:HGNC:11972]
17. RHBDL3 ENSG00000141314 2571 1.726 0.805 0.921 rhomboid like 3 [Source:HGNC Symbol;Acc:HGNC:16502]
18. SLC2A1 ENSG00000117394 2892 1.702 0.868 0.834 solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]
19. PAX3 ENSG00000135903 1126 1.699 0.840 0.859 paired box 3 [Source:HGNC Symbol;Acc:HGNC:8617]
20. HES5 ENSG00000197921, ENSG00000273529 9293 1.688 0.870 0.818 hes family bHLH transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:19764]
21. SLC1A2 ENSG00000110436 1231 1.686 0.852 0.834 solute carrier family 1 member 2 [Source:HGNC Symbol;Acc:HGNC:10940]
22. LOC100240734 1898 1.681 0.771 0.910 uncharacterized LOC100240734
23. DLL1 ENSG00000198719, ENSG00000275555 1642 1.681 0.845 0.836 delta like canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2908]
24. TTYH1 ENSG00000167614, ENSG00000275650, ENSG00000276537, ENSG00000276887 2414 1.673 0.766 0.907 tweety family member 1 [Source:HGNC Symbol;Acc:HGNC:13476]
25. FGFR3 ENSG00000068078 2862 1.67 0.874 0.796 fibroblast growth factor receptor 3 [Source:HGNC Symbol;Acc:HGNC:3690]
26. ZIC4 ENSG00000174963 2667 1.668 0.860 0.808 Zic family member 4 [Source:HGNC Symbol;Acc:HGNC:20393]
27. LINC00925 LINC00925 517 1.665 0.888 0.777
28. GBX2 ENSG00000168505 227 1.657 0.714 0.943 gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]
29. CKB ENSG00000166165 54181 1.655 0.782 0.873 creatine kinase B [Source:HGNC Symbol;Acc:HGNC:1991]
30. IGFBPL1 ENSG00000137142 3283 1.654 0.807 0.847 insulin like growth factor binding protein like 1 [Source:HGNC Symbol;Acc:HGNC:20081]
31. RASSF2 ENSG00000101265 1157 1.652 0.777 0.875 Ras association domain family member 2 [Source:HGNC Symbol;Acc:HGNC:9883]
32. HES6 ENSG00000144485 4284 1.641 0.848 0.793 hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]
33. CRNDE ENSG00000245694 3754 1.638 0.811 0.827 colorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]
34. ZIC1 ENSG00000152977 18260 1.634 0.850 0.784 Zic family member 1 [Source:HGNC Symbol;Acc:HGNC:12872]
35. CCDC85C ENSG00000205476 3808 1.628 0.768 0.860 coiled-coil domain containing 85C [Source:HGNC Symbol;Acc:HGNC:35459]
36. WNT3A ENSG00000154342 267 1.627 0.910 0.717 Wnt family member 3A [Source:HGNC Symbol;Acc:HGNC:15983]
37. MSX1 ENSG00000163132 2038 1.627 0.878 0.749 msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391]
38. NRARP ENSG00000198435 1658 1.623 0.799 0.824 NOTCH regulated ankyrin repeat protein [Source:HGNC Symbol;Acc:HGNC:33843]
39. RGS20 ENSG00000147509 282 1.617 0.792 0.825 regulator of G protein signaling 20 [Source:HGNC Symbol;Acc:HGNC:14600]
40. MSI1 ENSG00000135097 6935 1.615 0.803 0.812 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
41. SOX3 ENSG00000134595 5297 1.615 0.805 0.810 SRY-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]
42. DTX4 ENSG00000110042 2639 1.615 0.738 0.877 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
43. ZIC3 ENSG00000156925 420 1.615 0.862 0.753 Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
44. HS6ST1 ENSG00000136720 4974 1.602 0.718 0.884 heparan sulfate 6-O-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5201]
45. ASRGL1 ENSG00000162174 4293 1.602 0.756 0.846 asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
46. SP5 ENSG00000204335 211 1.601 0.843 0.758 Sp5 transcription factor [Source:HGNC Symbol;Acc:HGNC:14529]
47. FLJ12825 ENSG00000248265 822 1.591 0.782 0.809 uncharacterized LOC440101 [Source:NCBI gene;Acc:440101]
48. PDPN ENSG00000162493 5095 1.588 0.776 0.812 podoplanin [Source:HGNC Symbol;Acc:HGNC:29602]
49. SEMA5B ENSG00000082684 2716 1.588 0.723 0.865 semaphorin 5B [Source:HGNC Symbol;Acc:HGNC:10737]
50. NEDD9 ENSG00000111859 1509 1.586 0.809 0.777 neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]
51. CSPG5 ENSG00000114646 558 1.576 0.749 0.827 chondroitin sulfate proteoglycan 5 [Source:HGNC Symbol;Acc:HGNC:2467]
52. AXIN2 ENSG00000168646 2778 1.572 0.831 0.741 axin 2 [Source:HGNC Symbol;Acc:HGNC:904]
53. SRGAP3 ENSG00000196220 5297 1.572 0.775 0.797 SLIT-ROBO Rho GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:19744]
54. NRIP3 ENSG00000175352 238 1.557 0.806 0.751 nuclear receptor interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:1167]
55. MIAT ENSG00000225783 2977 1.554 0.722 0.832 myocardial infarction associated transcript [Source:HGNC Symbol;Acc:HGNC:33425]
56. FAM167A ENSG00000154319 299 1.552 0.788 0.764 family with sequence similarity 167 member A [Source:HGNC Symbol;Acc:HGNC:15549]
57. FAM181A ENSG00000140067, ENSG00000273533 1757 1.551 0.801 0.750 family with sequence similarity 181 member A [Source:HGNC Symbol;Acc:HGNC:20491]
58. MYCL ENSG00000116990 1128 1.532 0.704 0.828 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
59. TSPAN18 ENSG00000157570 9391 1.525 0.718 0.807 tetraspanin 18 [Source:HGNC Symbol;Acc:HGNC:20660]
60. NKD1 ENSG00000140807 2100 1.524 0.766 0.758 naked cuticle homolog 1 [Source:HGNC Symbol;Acc:HGNC:17045]
61. RFX4 ENSG00000111783 1382 1.515 0.777 0.738 regulatory factor X4 [Source:HGNC Symbol;Acc:HGNC:9985]
62. ADCYAP1R1 ENSG00000078549 321 1.51 0.791 0.719 ADCYAP receptor type I [Source:HGNC Symbol;Acc:HGNC:242]
63. PLEKHG1 ENSG00000120278 1008 1.506 0.729 0.777 pleckstrin homology and RhoGEF domain containing G1 [Source:HGNC Symbol;Acc:HGNC:20884]
64. DCC ENSG00000187323 538 1.495 0.788 0.707 DCC netrin 1 receptor [Source:HGNC Symbol;Acc:HGNC:2701]
65. CCND1 ENSG00000110092 8014 1.48 0.708 0.772 cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]
66. CECR2 ENSG00000099954 2223 1.478 0.735 0.743 CECR2, histone acetyl-lysine reader [Source:HGNC Symbol;Acc:HGNC:1840]
67. FZD3 ENSG00000104290 11650 1.467 0.729 0.738 frizzled class receptor 3 [Source:HGNC Symbol;Acc:HGNC:4041]
68. PAX6 ENSG00000007372 3710 1.458 0.737 0.721 paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
69. CELSR1 ENSG00000075275 716 1.456 0.728 0.728 cadherin EGF LAG seven-pass G-type receptor 1 [Source:HGNC Symbol;Acc:HGNC:1850]
70. DCLK2 ENSG00000170390 3503 1.444 0.720 0.724 doublecortin like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19002]
71. AGO1 ENSG00000092847 2525 1.441 0.731 0.710 argonaute 1, RISC catalytic component [Source:HGNC Symbol;Acc:HGNC:3262]
72. OLIG3 ENSG00000177468 918 0.905 0.905 - oligodendrocyte transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:18003]
73. PTPRZ1 ENSG00000106278 1326 0.883 - 0.883 protein tyrosine phosphatase, receptor type Z1 [Source:HGNC Symbol;Acc:HGNC:9685]
74. MIR124-2HG ENSG00000254377 940 0.877 - 0.877 MIR124-2 host gene [Source:HGNC Symbol;Acc:HGNC:48723]
75. ZIC5 ENSG00000139800 441 0.866 0.866 - Zic family member 5 [Source:HGNC Symbol;Acc:HGNC:20322]
76. POU4F2 ENSG00000151615 74 0.857 - 0.857 POU class 4 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9219]
77. IRX5 ENSG00000176842 2175 0.856 - 0.856 iroquois homeobox 5 [Source:HGNC Symbol;Acc:HGNC:14361]
78. CELSR2 ENSG00000143126 3566 0.852 - 0.852 cadherin EGF LAG seven-pass G-type receptor 2 [Source:HGNC Symbol;Acc:HGNC:3231]
79. PAX7 ENSG00000009709 810 0.85 - 0.850 paired box 7 [Source:HGNC Symbol;Acc:HGNC:8621]
80. GLDC ENSG00000178445 513 0.848 - 0.848 glycine decarboxylase [Source:HGNC Symbol;Acc:HGNC:4313]
81. NCKAP5 ENSG00000176771 481 0.845 - 0.845 NCK associated protein 5 [Source:HGNC Symbol;Acc:HGNC:29847]
82. FAM159B 132 0.841 - 0.841 family with sequence similarity 159 member B
83. ZIC2 ENSG00000043355 4457 0.838 0.838 - Zic family member 2 [Source:HGNC Symbol;Acc:HGNC:12873]
84. NOTCH1 ENSG00000148400 5516 0.835 - 0.835 notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
85. MLPH ENSG00000115648 37 0.834 0.834 - melanophilin [Source:HGNC Symbol;Acc:HGNC:29643]
86. CCDC140 ENSG00000163081 233 0.833 - 0.833 coiled-coil domain containing 140 [Source:HGNC Symbol;Acc:HGNC:26514]
87. TOX ENSG00000198846 1208 0.83 0.830 - thymocyte selection associated high mobility group box [Source:HGNC Symbol;Acc:HGNC:18988]
88. GPRC5B ENSG00000167191 684 0.829 - 0.829 G protein-coupled receptor class C group 5 member B [Source:HGNC Symbol;Acc:HGNC:13308]
89. BTG3 ENSG00000154640, ENSG00000281484 4437 0.821 - 0.821 BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]
90. ALPL ENSG00000162551 725 0.821 - 0.821 alkaline phosphatase, liver/bone/kidney [Source:HGNC Symbol;Acc:HGNC:438]
91. ROBO3 ENSG00000154134 1085 0.819 - 0.819 roundabout guidance receptor 3 [Source:HGNC Symbol;Acc:HGNC:13433]
92. NUAK2 ENSG00000163545 538 0.817 - 0.817 NUAK family kinase 2 [Source:HGNC Symbol;Acc:HGNC:29558]
93. WNT1 ENSG00000125084 1392 0.816 0.816 - Wnt family member 1 [Source:HGNC Symbol;Acc:HGNC:12774]
94. PCDH8 ENSG00000136099 203 0.815 - 0.815 protocadherin 8 [Source:HGNC Symbol;Acc:HGNC:8660]
95. LRRN1 ENSG00000175928 3973 0.813 0.813 - leucine rich repeat neuronal 1 [Source:HGNC Symbol;Acc:HGNC:20980]
96. RGS16 ENSG00000143333 2239 0.811 - 0.811 regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]
97. ARL4C ENSG00000188042 5437 0.81 - 0.810 ADP ribosylation factor like GTPase 4C [Source:HGNC Symbol;Acc:HGNC:698]
98. APCDD1 ENSG00000154856 2448 0.802 0.802 - APC down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:15718]
99. CA14 ENSG00000118298 1639 0.801 - 0.801 carbonic anhydrase 14 [Source:HGNC Symbol;Acc:HGNC:1372]
100. DPYSL5 ENSG00000157851 6855 0.799 - 0.799 dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]

There are 81 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA