Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for MSI1

Gene Name Gene ID Reads Annotation
MSI1 ENSG00000135097 6935 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]



Genes with expression patterns similar to MSI1

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. MSI1 ENSG00000135097 6935 2 1.000 1.000 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
2. SOX2 ENSG00000181449 19791 1.762 0.883 0.879 SRY-box 2 [Source:HGNC Symbol;Acc:HGNC:11195]
3. CKB ENSG00000166165 54181 1.759 0.873 0.886 creatine kinase B [Source:HGNC Symbol;Acc:HGNC:1991]
4. TTYH1 ENSG00000167614, ENSG00000275650, ENSG00000276537, ENSG00000276887 2414 1.758 0.860 0.898 tweety family member 1 [Source:HGNC Symbol;Acc:HGNC:13476]
5. POU3F2 ENSG00000184486 2683 1.739 0.888 0.851 POU class 3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9215]
6. DTX4 ENSG00000110042 2639 1.716 0.844 0.872 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
7. LOC100240734 1898 1.704 0.838 0.866 uncharacterized LOC100240734
8. LINC00461 ENSG00000245526 4465 1.703 0.851 0.852 long intergenic non-protein coding RNA 461 [Source:HGNC Symbol;Acc:HGNC:42810]
9. RND2 ENSG00000108830 3761 1.695 0.825 0.870 Rho family GTPase 2 [Source:HGNC Symbol;Acc:HGNC:18315]
10. RHBDL3 ENSG00000141314 2571 1.687 0.828 0.859 rhomboid like 3 [Source:HGNC Symbol;Acc:HGNC:16502]
11. SOX3 ENSG00000134595 5297 1.681 0.860 0.821 SRY-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]
12. SEMA5B ENSG00000082684 2716 1.68 0.839 0.841 semaphorin 5B [Source:HGNC Symbol;Acc:HGNC:10737]
13. HES5 ENSG00000197921, ENSG00000273529 9293 1.674 0.850 0.824 hes family bHLH transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:19764]
14. IGFBPL1 ENSG00000137142 3283 1.667 0.816 0.851 insulin like growth factor binding protein like 1 [Source:HGNC Symbol;Acc:HGNC:20081]
15. ZIC4 ENSG00000174963 2667 1.665 0.857 0.808 Zic family member 4 [Source:HGNC Symbol;Acc:HGNC:20393]
16. RFX4 ENSG00000111783 1382 1.66 0.864 0.796 regulatory factor X4 [Source:HGNC Symbol;Acc:HGNC:9985]
17. NRARP ENSG00000198435 1658 1.659 0.811 0.848 NOTCH regulated ankyrin repeat protein [Source:HGNC Symbol;Acc:HGNC:33843]
18. HOXB-AS3 ENSG00000233101 1776 1.658 0.812 0.846 HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
19. ZIC1 ENSG00000152977 18260 1.655 0.870 0.785 Zic family member 1 [Source:HGNC Symbol;Acc:HGNC:12872]
20. TSPAN18 ENSG00000157570 9391 1.651 0.790 0.861 tetraspanin 18 [Source:HGNC Symbol;Acc:HGNC:20660]
21. SYT2 ENSG00000143858 2364 1.646 0.815 0.831 synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
22. ZIC2 ENSG00000043355 4457 1.645 0.879 0.766 Zic family member 2 [Source:HGNC Symbol;Acc:HGNC:12873]
23. APCDD1 ENSG00000154856 2448 1.642 0.848 0.794 APC down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:15718]
24. DLL1 ENSG00000198719, ENSG00000275555 1642 1.635 0.843 0.792 delta like canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2908]
25. SCUBE2 ENSG00000175356 1730 1.633 0.824 0.809 signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
26. TKTL1 ENSG00000007350 1212 1.633 0.837 0.796 transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]
27. NOTCH1 ENSG00000148400 5516 1.621 0.752 0.869 notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
28. PDPN ENSG00000162493 5095 1.617 0.830 0.787 podoplanin [Source:HGNC Symbol;Acc:HGNC:29602]
29. SOX1 ENSG00000182968 1339 1.615 0.803 0.812 SRY-box 1 [Source:HGNC Symbol;Acc:HGNC:11189]
30. WSCD1 ENSG00000179314 1121 1.61 0.775 0.835 WSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29060]
31. DPYSL5 ENSG00000157851 6855 1.606 0.748 0.858 dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]
32. HES6 ENSG00000144485 4284 1.605 0.786 0.819 hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]
33. CRABP1 ENSG00000166426 2178 1.6 0.792 0.808 cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2338]
34. ARL4A ENSG00000122644 3071 1.597 0.800 0.797 ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
35. MYCL ENSG00000116990 1128 1.597 0.792 0.805 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
36. NES ENSG00000132688 20034 1.597 0.723 0.874 nestin [Source:HGNC Symbol;Acc:HGNC:7756]
37. FGFR3 ENSG00000068078 2862 1.594 0.781 0.813 fibroblast growth factor receptor 3 [Source:HGNC Symbol;Acc:HGNC:3690]
38. CELSR2 ENSG00000143126 3566 1.589 0.718 0.871 cadherin EGF LAG seven-pass G-type receptor 2 [Source:HGNC Symbol;Acc:HGNC:3231]
39. ASRGL1 ENSG00000162174 4293 1.587 0.752 0.835 asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
40. SLC1A2 ENSG00000110436 1231 1.581 0.799 0.782 solute carrier family 1 member 2 [Source:HGNC Symbol;Acc:HGNC:10940]
41. ZIC3 ENSG00000156925 420 1.58 0.825 0.755 Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
42. SRGAP3 ENSG00000196220 5297 1.571 0.744 0.827 SLIT-ROBO Rho GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:19744]
43. FZD10 ENSG00000111432 608 1.562 0.814 0.748 frizzled class receptor 10 [Source:HGNC Symbol;Acc:HGNC:4039]
44. ZIC5 ENSG00000139800 441 1.558 0.828 0.730 Zic family member 5 [Source:HGNC Symbol;Acc:HGNC:20322]
45. FAM181A ENSG00000140067, ENSG00000273533 1757 1.552 0.809 0.743 family with sequence similarity 181 member A [Source:HGNC Symbol;Acc:HGNC:20491]
46. SLC2A1 ENSG00000117394 2892 1.549 0.761 0.788 solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]
47. HS6ST1 ENSG00000136720 4974 1.543 0.755 0.788 heparan sulfate 6-O-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5201]
48. GDF10 ENSG00000266524 711 1.542 0.833 0.709 growth differentiation factor 10 [Source:HGNC Symbol;Acc:HGNC:4215]
49. AGO1 ENSG00000092847 2525 1.539 0.783 0.756 argonaute 1, RISC catalytic component [Source:HGNC Symbol;Acc:HGNC:3262]
50. JAM2 ENSG00000154721 1771 1.537 0.776 0.761 junctional adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:14686]
51. RGMA ENSG00000182175 3405 1.534 0.776 0.758 repulsive guidance molecule BMP co-receptor a [Source:HGNC Symbol;Acc:HGNC:30308]
52. MIAT ENSG00000225783 2977 1.531 0.753 0.778 myocardial infarction associated transcript [Source:HGNC Symbol;Acc:HGNC:33425]
53. CSPG5 ENSG00000114646 558 1.53 0.702 0.828 chondroitin sulfate proteoglycan 5 [Source:HGNC Symbol;Acc:HGNC:2467]
54. CDH4 ENSG00000179242, ENSG00000280641 1069 1.528 0.710 0.818 cadherin 4 [Source:HGNC Symbol;Acc:HGNC:1763]
55. PRDM13 ENSG00000112238 312 1.523 0.785 0.738 PR/SET domain 13 [Source:HGNC Symbol;Acc:HGNC:13998]
56. ZBTB16 ENSG00000109906 287 1.513 0.758 0.755 zinc finger and BTB domain containing 16 [Source:HGNC Symbol;Acc:HGNC:12930]
57. PAX3 ENSG00000135903 1126 1.513 0.745 0.768 paired box 3 [Source:HGNC Symbol;Acc:HGNC:8617]
58. RGS20 ENSG00000147509 282 1.512 0.760 0.752 regulator of G protein signaling 20 [Source:HGNC Symbol;Acc:HGNC:14600]
59. GREB1 ENSG00000196208 4256 1.5 0.735 0.765 growth regulating estrogen receptor binding 1 [Source:HGNC Symbol;Acc:HGNC:24885]
60. KLHDC8A ENSG00000162873 2265 1.497 0.714 0.783 kelch domain containing 8A [Source:HGNC Symbol;Acc:HGNC:25573]
61. SYT11 ENSG00000132718 3832 1.494 0.703 0.791 synaptotagmin 11 [Source:HGNC Symbol;Acc:HGNC:19239]
62. PCDH8 ENSG00000136099 203 1.484 0.715 0.769 protocadherin 8 [Source:HGNC Symbol;Acc:HGNC:8660]
63. LINC00925 LINC00925 517 1.467 0.726 0.741
64. CRNDE ENSG00000245694 3754 1.464 0.756 0.708 colorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]
65. CNIH2 ENSG00000174871 3037 1.448 0.709 0.739 cornichon family AMPA receptor auxiliary protein 2 [Source:HGNC Symbol;Acc:HGNC:28744]
66. DCLK2 ENSG00000170390 3503 1.447 0.746 0.701 doublecortin like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19002]
67. LINC01158 1332 1.437 0.710 0.727 long intergenic non-protein coding RNA 1158, transcript variant 4
68. TMEM158 ENSG00000249992 678 1.407 0.702 0.705 transmembrane protein 158 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:30293]
69. CCDC85C ENSG00000205476 3808 0.866 - 0.866 coiled-coil domain containing 85C [Source:HGNC Symbol;Acc:HGNC:35459]
70. RGS16 ENSG00000143333 2239 0.846 - 0.846 regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]
71. HOXB9 ENSG00000170689 2051 0.836 - 0.836 homeobox B9 [Source:HGNC Symbol;Acc:HGNC:5120]
72. AXIN2 ENSG00000168646 2778 0.833 0.833 - axin 2 [Source:HGNC Symbol;Acc:HGNC:904]
73. HOXB2 ENSG00000173917 6040 0.829 0.829 - homeobox B2 [Source:HGNC Symbol;Acc:HGNC:5113]
74. CCND1 ENSG00000110092 8014 0.829 - 0.829 cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]
75. FLJ12825 ENSG00000248265 822 0.828 - 0.828 uncharacterized LOC440101 [Source:NCBI gene;Acc:440101]
76. CECR2 ENSG00000099954 2223 0.826 - 0.826 CECR2, histone acetyl-lysine reader [Source:HGNC Symbol;Acc:HGNC:1840]
77. CXCR4 ENSG00000121966 4708 0.826 - 0.826 C-X-C motif chemokine receptor 4 [Source:HGNC Symbol;Acc:HGNC:2561]
78. GLDC ENSG00000178445 513 0.825 - 0.825 glycine decarboxylase [Source:HGNC Symbol;Acc:HGNC:4313]
79. PTPRZ1 ENSG00000106278 1326 0.824 - 0.824 protein tyrosine phosphatase, receptor type Z1 [Source:HGNC Symbol;Acc:HGNC:9685]
80. HOXD3 ENSG00000128652 1324 0.822 - 0.822 homeobox D3 [Source:HGNC Symbol;Acc:HGNC:5137]
81. WNT7A ENSG00000154764 131 0.822 0.822 - Wnt family member 7A [Source:HGNC Symbol;Acc:HGNC:12786]
82. HOXB8 ENSG00000120068 2378 0.821 - 0.821 homeobox B8 [Source:HGNC Symbol;Acc:HGNC:5119]
83. CHD7 ENSG00000171316 9450 0.819 - 0.819 chromodomain helicase DNA binding protein 7 [Source:HGNC Symbol;Acc:HGNC:20626]
84. ARL4C ENSG00000188042 5437 0.818 - 0.818 ADP ribosylation factor like GTPase 4C [Source:HGNC Symbol;Acc:HGNC:698]
85. LFNG ENSG00000106003 1260 0.816 - 0.816 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:6560]
86. TOX3 ENSG00000103460 1758 0.811 0.811 - TOX high mobility group box family member 3 [Source:HGNC Symbol;Acc:HGNC:11972]
87. PAX7 ENSG00000009709 810 0.807 - 0.807 paired box 7 [Source:HGNC Symbol;Acc:HGNC:8621]
88. ADD2 ENSG00000075340 810 0.807 - 0.807 adducin 2 [Source:HGNC Symbol;Acc:HGNC:244]
89. HOXC9 ENSG00000180806 3191 0.807 - 0.807 homeobox C9 [Source:HGNC Symbol;Acc:HGNC:5130]
90. SLITRK2 ENSG00000185985 905 0.807 0.807 - SLIT and NTRK like family member 2 [Source:HGNC Symbol;Acc:HGNC:13449]
91. ENPP2 ENSG00000136960 3320 0.805 0.805 - ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:3357]
92. GPRC5B ENSG00000167191 684 0.802 - 0.802 G protein-coupled receptor class C group 5 member B [Source:HGNC Symbol;Acc:HGNC:13308]
93. FZD3 ENSG00000104290 11650 0.801 0.801 - frizzled class receptor 3 [Source:HGNC Symbol;Acc:HGNC:4041]
94. MIR124-2HG ENSG00000254377 940 0.798 - 0.798 MIR124-2 host gene [Source:HGNC Symbol;Acc:HGNC:48723]
95. WHSC1 9250 0.796 - 0.796 Wolf-Hirschhorn syndrome candidate 1, transcript variant X7
96. NUAK2 ENSG00000163545 538 0.795 - 0.795 NUAK family kinase 2 [Source:HGNC Symbol;Acc:HGNC:29558]
97. REPIN1 ENSG00000214022 4516 0.792 - 0.792 replication initiator 1 [Source:HGNC Symbol;Acc:HGNC:17922]
98. PAX6 ENSG00000007372 3710 0.792 0.792 - paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
99. ADGRG1 ENSG00000205336 800 0.791 - 0.791 adhesion G protein-coupled receptor G1 [Source:HGNC Symbol;Acc:HGNC:4512]
100. FAM219A ENSG00000164970 1747 0.791 - 0.791 family with sequence similarity 219 member A [Source:HGNC Symbol;Acc:HGNC:19920]

There are 129 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA