Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LINC00461

Gene Name Gene ID Reads Annotation
LINC00461 ENSG00000245526 4465 long intergenic non-protein coding RNA 461 [Source:HGNC Symbol;Acc:HGNC:42810]



Genes with expression patterns similar to LINC00461

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. LINC00461 ENSG00000245526 4465 2 1.000 1.000 long intergenic non-protein coding RNA 461 [Source:HGNC Symbol;Acc:HGNC:42810]
2. SOX2 ENSG00000181449 19791 1.926 0.963 0.963 SRY-box 2 [Source:HGNC Symbol;Acc:HGNC:11195]
3. RND2 ENSG00000108830 3761 1.871 0.927 0.944 Rho family GTPase 2 [Source:HGNC Symbol;Acc:HGNC:18315]
4. TTYH1 ENSG00000167614, ENSG00000275650, ENSG00000276537, ENSG00000276887 2414 1.869 0.912 0.957 tweety family member 1 [Source:HGNC Symbol;Acc:HGNC:13476]
5. POU3F2 ENSG00000184486 2683 1.864 0.915 0.949 POU class 3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9215]
6. RHBDL3 ENSG00000141314 2571 1.858 0.897 0.961 rhomboid like 3 [Source:HGNC Symbol;Acc:HGNC:16502]
7. CKB ENSG00000166165 54181 1.85 0.918 0.932 creatine kinase B [Source:HGNC Symbol;Acc:HGNC:1991]
8. HES6 ENSG00000144485 4284 1.833 0.919 0.914 hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]
9. SOX1 ENSG00000182968 1339 1.822 0.887 0.935 SRY-box 1 [Source:HGNC Symbol;Acc:HGNC:11189]
10. CRABP1 ENSG00000166426 2178 1.819 0.921 0.898 cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2338]
11. IGFBPL1 ENSG00000137142 3283 1.818 0.902 0.916 insulin like growth factor binding protein like 1 [Source:HGNC Symbol;Acc:HGNC:20081]
12. HOXB-AS3 ENSG00000233101 1776 1.818 0.910 0.908 HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
13. SYT2 ENSG00000143858 2364 1.806 0.864 0.942 synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
14. HES5 ENSG00000197921, ENSG00000273529 9293 1.802 0.918 0.884 hes family bHLH transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:19764]
15. MIAT ENSG00000225783 2977 1.798 0.882 0.916 myocardial infarction associated transcript [Source:HGNC Symbol;Acc:HGNC:33425]
16. DLL1 ENSG00000198719, ENSG00000275555 1642 1.789 0.882 0.907 delta like canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2908]
17. ZIC4 ENSG00000174963 2667 1.775 0.913 0.862 Zic family member 4 [Source:HGNC Symbol;Acc:HGNC:20393]
18. DTX4 ENSG00000110042 2639 1.771 0.856 0.915 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
19. ARL4A ENSG00000122644 3071 1.76 0.839 0.921 ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
20. FGFR3 ENSG00000068078 2862 1.754 0.897 0.857 fibroblast growth factor receptor 3 [Source:HGNC Symbol;Acc:HGNC:3690]
21. SCUBE2 ENSG00000175356 1730 1.753 0.875 0.878 signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
22. SLC2A1 ENSG00000117394 2892 1.748 0.908 0.840 solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]
23. ASRGL1 ENSG00000162174 4293 1.746 0.859 0.887 asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
24. SRGAP3 ENSG00000196220 5297 1.741 0.865 0.876 SLIT-ROBO Rho GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:19744]
25. HS6ST1 ENSG00000136720 4974 1.74 0.852 0.888 heparan sulfate 6-O-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5201]
26. LFNG ENSG00000106003 1260 1.739 0.802 0.937 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:6560]
27. LOC100240734 1898 1.733 0.815 0.918 uncharacterized LOC100240734
28. LINC00925 LINC00925 517 1.729 0.866 0.863
29. MIR124-2HG ENSG00000254377 940 1.729 0.785 0.944 MIR124-2 host gene [Source:HGNC Symbol;Acc:HGNC:48723]
30. CELSR2 ENSG00000143126 3566 1.729 0.836 0.893 cadherin EGF LAG seven-pass G-type receptor 2 [Source:HGNC Symbol;Acc:HGNC:3231]
31. FZD10 ENSG00000111432 608 1.719 0.852 0.867 frizzled class receptor 10 [Source:HGNC Symbol;Acc:HGNC:4039]
32. WSCD1 ENSG00000179314 1121 1.719 0.835 0.884 WSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29060]
33. TOX3 ENSG00000103460 1758 1.717 0.907 0.810 TOX high mobility group box family member 3 [Source:HGNC Symbol;Acc:HGNC:11972]
34. SOX3 ENSG00000134595 5297 1.716 0.858 0.858 SRY-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]
35. ZIC1 ENSG00000152977 18260 1.715 0.908 0.807 Zic family member 1 [Source:HGNC Symbol;Acc:HGNC:12872]
36. NRARP ENSG00000198435 1658 1.712 0.835 0.877 NOTCH regulated ankyrin repeat protein [Source:HGNC Symbol;Acc:HGNC:33843]
37. CSPG5 ENSG00000114646 558 1.705 0.828 0.877 chondroitin sulfate proteoglycan 5 [Source:HGNC Symbol;Acc:HGNC:2467]
38. MSI1 ENSG00000135097 6935 1.703 0.851 0.852 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
39. PDPN ENSG00000162493 5095 1.7 0.858 0.842 podoplanin [Source:HGNC Symbol;Acc:HGNC:29602]
40. SEMA5B ENSG00000082684 2716 1.692 0.814 0.878 semaphorin 5B [Source:HGNC Symbol;Acc:HGNC:10737]
41. DPYSL5 ENSG00000157851 6855 1.686 0.811 0.875 dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]
42. TKTL1 ENSG00000007350 1212 1.686 0.853 0.833 transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]
43. TSPAN18 ENSG00000157570 9391 1.681 0.846 0.835 tetraspanin 18 [Source:HGNC Symbol;Acc:HGNC:20660]
44. FAM181A ENSG00000140067, ENSG00000273533 1757 1.678 0.869 0.809 family with sequence similarity 181 member A [Source:HGNC Symbol;Acc:HGNC:20491]
45. NES ENSG00000132688 20034 1.678 0.835 0.843 nestin [Source:HGNC Symbol;Acc:HGNC:7756]
46. PRDM13 ENSG00000112238 312 1.676 0.844 0.832 PR/SET domain 13 [Source:HGNC Symbol;Acc:HGNC:13998]
47. PTPRZ1 ENSG00000106278 1326 1.674 0.771 0.903 protein tyrosine phosphatase, receptor type Z1 [Source:HGNC Symbol;Acc:HGNC:9685]
48. RASSF2 ENSG00000101265 1157 1.673 0.829 0.844 Ras association domain family member 2 [Source:HGNC Symbol;Acc:HGNC:9883]
49. JAM2 ENSG00000154721 1771 1.67 0.822 0.848 junctional adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:14686]
50. MYCL ENSG00000116990 1128 1.668 0.792 0.876 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
51. ZIC3 ENSG00000156925 420 1.668 0.864 0.804 Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
52. FLJ12825 ENSG00000248265 822 1.664 0.802 0.862 uncharacterized LOC440101 [Source:NCBI gene;Acc:440101]
53. RFX4 ENSG00000111783 1382 1.661 0.848 0.813 regulatory factor X4 [Source:HGNC Symbol;Acc:HGNC:9985]
54. FZD3 ENSG00000104290 11650 1.658 0.906 0.752 frizzled class receptor 3 [Source:HGNC Symbol;Acc:HGNC:4041]
55. SYT11 ENSG00000132718 3832 1.654 0.804 0.850 synaptotagmin 11 [Source:HGNC Symbol;Acc:HGNC:19239]
56. CXCR4 ENSG00000121966 4708 1.646 0.772 0.874 C-X-C motif chemokine receptor 4 [Source:HGNC Symbol;Acc:HGNC:2561]
57. CCDC85C ENSG00000205476 3808 1.643 0.775 0.868 coiled-coil domain containing 85C [Source:HGNC Symbol;Acc:HGNC:35459]
58. PAK3 ENSG00000077264 890 1.64 0.875 0.765 p21 (RAC1) activated kinase 3 [Source:HGNC Symbol;Acc:HGNC:8592]
59. ZIC2 ENSG00000043355 4457 1.638 0.883 0.755 Zic family member 2 [Source:HGNC Symbol;Acc:HGNC:12873]
60. ZIC5 ENSG00000139800 441 1.637 0.901 0.736 Zic family member 5 [Source:HGNC Symbol;Acc:HGNC:20322]
61. SLC1A2 ENSG00000110436 1231 1.634 0.808 0.826 solute carrier family 1 member 2 [Source:HGNC Symbol;Acc:HGNC:10940]
62. CDH4 ENSG00000179242, ENSG00000280641 1069 1.634 0.803 0.831 cadherin 4 [Source:HGNC Symbol;Acc:HGNC:1763]
63. ZBTB16 ENSG00000109906 287 1.633 0.820 0.813 zinc finger and BTB domain containing 16 [Source:HGNC Symbol;Acc:HGNC:12930]
64. APCDD1 ENSG00000154856 2448 1.633 0.858 0.775 APC down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:15718]
65. CTNND2 ENSG00000169862 1640 1.624 0.853 0.771 catenin delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
66. RGS20 ENSG00000147509 282 1.617 0.800 0.817 regulator of G protein signaling 20 [Source:HGNC Symbol;Acc:HGNC:14600]
67. NOTCH1 ENSG00000148400 5516 1.615 0.763 0.852 notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
68. GLDC ENSG00000178445 513 1.612 0.727 0.885 glycine decarboxylase [Source:HGNC Symbol;Acc:HGNC:4313]
69. CRNDE ENSG00000245694 3754 1.611 0.817 0.794 colorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]
70. RGS16 ENSG00000143333 2239 1.606 0.732 0.874 regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]
71. DCC ENSG00000187323 538 1.603 0.885 0.718 DCC netrin 1 receptor [Source:HGNC Symbol;Acc:HGNC:2701]
72. PCDH8 ENSG00000136099 203 1.597 0.748 0.849 protocadherin 8 [Source:HGNC Symbol;Acc:HGNC:8660]
73. ENPP2 ENSG00000136960 3320 1.574 0.870 0.704 ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:3357]
74. GREB1 ENSG00000196208 4256 1.569 0.767 0.802 growth regulating estrogen receptor binding 1 [Source:HGNC Symbol;Acc:HGNC:24885]
75. OLIG3 ENSG00000177468 918 1.569 0.861 0.708 oligodendrocyte transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:18003]
76. LINC01158 1332 1.561 0.747 0.814 long intergenic non-protein coding RNA 1158, transcript variant 4
77. PAX3 ENSG00000135903 1126 1.554 0.740 0.814 paired box 3 [Source:HGNC Symbol;Acc:HGNC:8617]
78. AXIN2 ENSG00000168646 2778 1.55 0.847 0.703 axin 2 [Source:HGNC Symbol;Acc:HGNC:904]
79. LRIG1 ENSG00000144749, ENSG00000282243 1639 1.548 0.772 0.776 leucine rich repeats and immunoglobulin like domains 1 [Source:HGNC Symbol;Acc:HGNC:17360]
80. GDF10 ENSG00000266524 711 1.539 0.831 0.708 growth differentiation factor 10 [Source:HGNC Symbol;Acc:HGNC:4215]
81. TMEM158 ENSG00000249992 678 1.538 0.827 0.711 transmembrane protein 158 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:30293]
82. NPAS3 ENSG00000151322 1043 1.534 0.738 0.796 neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
83. RGMA ENSG00000182175 3405 1.53 0.810 0.720 repulsive guidance molecule BMP co-receptor a [Source:HGNC Symbol;Acc:HGNC:30308]
84. HES4 ENSG00000188290 745 1.53 0.759 0.771 hes family bHLH transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:24149]
85. KLHDC8A ENSG00000162873 2265 1.53 0.747 0.783 kelch domain containing 8A [Source:HGNC Symbol;Acc:HGNC:25573]
86. AGO1 ENSG00000092847 2525 1.527 0.790 0.737 argonaute 1, RISC catalytic component [Source:HGNC Symbol;Acc:HGNC:3262]
87. WNT3A ENSG00000154342 267 1.527 0.793 0.734 Wnt family member 3A [Source:HGNC Symbol;Acc:HGNC:15983]
88. DCLK2 ENSG00000170390 3503 1.523 0.782 0.741 doublecortin like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19002]
89. DKK3 ENSG00000050165 1618 1.523 0.782 0.741 dickkopf WNT signaling pathway inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:2893]
90. NKD1 ENSG00000140807 2100 1.519 0.763 0.756 naked cuticle homolog 1 [Source:HGNC Symbol;Acc:HGNC:17045]
91. MSX1 ENSG00000163132 2038 1.513 0.753 0.760 msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391]
92. FAM167A ENSG00000154319 299 1.512 0.787 0.725 family with sequence similarity 167 member A [Source:HGNC Symbol;Acc:HGNC:15549]
93. NRIP3 ENSG00000175352 238 1.508 0.769 0.739 nuclear receptor interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:1167]
94. PAX6 ENSG00000007372 3710 1.508 0.750 0.758 paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
95. MAP1B ENSG00000131711 44568 1.508 0.708 0.800 microtubule associated protein 1B [Source:HGNC Symbol;Acc:HGNC:6836]
96. TUBB2B ENSG00000137285 35642 1.495 0.707 0.788 tubulin beta 2B class IIb [Source:HGNC Symbol;Acc:HGNC:30829]
97. ADCYAP1R1 ENSG00000078549 321 1.491 0.729 0.762 ADCYAP receptor type I [Source:HGNC Symbol;Acc:HGNC:242]
98. ADD2 ENSG00000075340 810 1.484 0.739 0.745 adducin 2 [Source:HGNC Symbol;Acc:HGNC:244]
99. SOX21 ENSG00000125285 209 1.472 0.710 0.762 SRY-box 21 [Source:HGNC Symbol;Acc:HGNC:11197]
100. SP5 ENSG00000204335 211 1.457 0.741 0.716 Sp5 transcription factor [Source:HGNC Symbol;Acc:HGNC:14529]

There are 137 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA