Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LHX3

Gene Name Gene ID Reads Annotation
LHX3 ENSG00000107187 507 LIM homeobox 3 [Source:HGNC Symbol;Acc:HGNC:6595]



Genes with expression patterns similar to LHX3

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. LHX3 ENSG00000107187 507 2 1.000 1.000 LIM homeobox 3 [Source:HGNC Symbol;Acc:HGNC:6595]
2. OLIG2 ENSG00000205927 533 1.845 0.876 0.969 oligodendrocyte transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:9398]
3. INA ENSG00000148798 12811 1.815 0.923 0.892 internexin neuronal intermediate filament protein alpha [Source:HGNC Symbol;Acc:HGNC:6057]
4. OLIG1 ENSG00000184221 511 1.812 0.876 0.936 oligodendrocyte transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:16983]
5. PDLIM1 ENSG00000107438 11977 1.802 0.913 0.889 PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]
6. CDK5R1 ENSG00000176749 4151 1.799 0.928 0.871 cyclin dependent kinase 5 regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:1775]
7. NEFM ENSG00000104722 6565 1.775 0.906 0.869 neurofilament medium [Source:HGNC Symbol;Acc:HGNC:7734]
8. SLC10A4 ENSG00000145248 260 1.773 0.891 0.882 solute carrier family 10 member 4 [Source:HGNC Symbol;Acc:HGNC:22980]
9. L1CAM ENSG00000198910 1652 1.765 0.888 0.877 L1 cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:6470]
10. GAP43 ENSG00000172020 9990 1.765 0.881 0.884 growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]
11. SST ENSG00000157005 12887 1.762 0.907 0.855 somatostatin [Source:HGNC Symbol;Acc:HGNC:11329]
12. MLLT11 ENSG00000213190 18099 1.751 0.931 0.820 MLLT11, transcription factor 7 cofactor [Source:HGNC Symbol;Acc:HGNC:16997]
13. MAPT ENSG00000186868, ENSG00000276155, ENSG00000277956 1829 1.748 0.886 0.862 microtubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]
14. RTN1 ENSG00000139970 4545 1.733 0.896 0.837 reticulon 1 [Source:HGNC Symbol;Acc:HGNC:10467]
15. NEFL ENSG00000277586 6204 1.709 0.932 0.777 neurofilament light [Source:HGNC Symbol;Acc:HGNC:7739]
16. GDAP1L1 ENSG00000124194 1388 1.705 0.866 0.839 ganglioside induced differentiation associated protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:4213]
17. GNAO1 ENSG00000087258 567 1.702 0.841 0.861 G protein subunit alpha o1 [Source:HGNC Symbol;Acc:HGNC:4389]
18. CAMK2N1 ENSG00000162545 10727 1.696 0.871 0.825 calcium/calmodulin dependent protein kinase II inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:24190]
19. SV2C ENSG00000122012 837 1.692 0.888 0.804 synaptic vesicle glycoprotein 2C [Source:HGNC Symbol;Acc:HGNC:30670]
20. GRIK3 ENSG00000163873 146 1.676 0.891 0.785 glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
21. KIF1A ENSG00000130294 2920 1.656 0.881 0.775 kinesin family member 1A [Source:HGNC Symbol;Acc:HGNC:888]
22. UBE2QL1 ENSG00000215218 1320 1.65 0.853 0.797 ubiquitin conjugating enzyme E2 Q family like 1 [Source:HGNC Symbol;Acc:HGNC:37269]
23. HMP19 643 1.643 0.840 0.803 HMP19 protein
24. ARHGAP36 ENSG00000147256 614 1.64 0.869 0.771 Rho GTPase activating protein 36 [Source:HGNC Symbol;Acc:HGNC:26388]
25. MYT1 ENSG00000196132, ENSG00000276876 1089 1.637 0.893 0.744 myelin transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:7622]
26. STMN2 ENSG00000104435 16286 1.636 0.877 0.759 stathmin 2 [Source:HGNC Symbol;Acc:HGNC:10577]
27. TUBB2A ENSG00000137267 4508 1.631 0.860 0.771 tubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]
28. CRMP1 ENSG00000072832 9692 1.631 0.845 0.786 collapsin response mediator protein 1 [Source:HGNC Symbol;Acc:HGNC:2365]
29. MAPRE2 ENSG00000166974 5413 1.63 0.848 0.782 microtubule associated protein RP/EB family member 2 [Source:HGNC Symbol;Acc:HGNC:6891]
30. ECEL1 ENSG00000171551 286 1.63 0.745 0.885 endothelin converting enzyme like 1 [Source:HGNC Symbol;Acc:HGNC:3147]
31. SCML4 ENSG00000146285 198 1.625 0.790 0.835 Scm polycomb group protein like 4 [Source:HGNC Symbol;Acc:HGNC:21397]
32. STMN4 ENSG00000015592 748 1.625 0.794 0.831 stathmin 4 [Source:HGNC Symbol;Acc:HGNC:16078]
33. TERF2IP ENSG00000166848 18929 1.614 0.841 0.773 TERF2 interacting protein [Source:HGNC Symbol;Acc:HGNC:19246]
34. ATP6V1G2 ENSG00000206445, ENSG00000213760, ENSG00000226850, ENSG00000227587, ENSG00000230900, ENSG00000234668, ENSG00000234920 2106 1.608 0.845 0.763 ATPase H+ transporting V1 subunit G2 [Source:HGNC Symbol;Acc:HGNC:862]
35. ISLR2 ENSG00000167178 161 1.597 0.764 0.833 immunoglobulin superfamily containing leucine rich repeat 2 [Source:HGNC Symbol;Acc:HGNC:29286]
36. LOC101929563 1404 1.596 0.894 0.702 uncharacterized LOC101929563
37. ACTL6B ENSG00000077080 270 1.596 0.777 0.819 actin like 6B [Source:HGNC Symbol;Acc:HGNC:160]
38. DCX ENSG00000077279 9569 1.595 0.894 0.701 doublecortin [Source:HGNC Symbol;Acc:HGNC:2714]
39. ENO2 ENSG00000111674 2931 1.594 0.842 0.752 enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]
40. VSTM2A ENSG00000170419 227 1.585 0.839 0.746 V-set and transmembrane domain containing 2A [Source:HGNC Symbol;Acc:HGNC:28499]
41. SYT4 ENSG00000132872 928 1.573 0.864 0.709 synaptotagmin 4 [Source:HGNC Symbol;Acc:HGNC:11512]
42. FXYD7 ENSG00000221946 253 1.561 0.752 0.809 FXYD domain containing ion transport regulator 7 [Source:HGNC Symbol;Acc:HGNC:4034]
43. RAB6B ENSG00000154917 1104 1.556 0.813 0.743 RAB6B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:14902]
44. TUBB3 ENSG00000258947 53998 1.555 0.840 0.715 tubulin beta 3 class III [Source:HGNC Symbol;Acc:HGNC:20772]
45. ELAVL3 ENSG00000196361 2164 1.552 0.802 0.750 ELAV like RNA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:3314]
46. RBFOX3 ENSG00000167281 329 1.547 0.780 0.767 RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097]
47. SMPD3 ENSG00000103056 241 1.544 0.834 0.710 sphingomyelin phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:14240]
48. CCDC184 ENSG00000177875 785 1.541 0.803 0.738 coiled-coil domain containing 184 [Source:HGNC Symbol;Acc:HGNC:33749]
49. DUSP4 ENSG00000120875 4982 1.529 0.762 0.767 dual specificity phosphatase 4 [Source:HGNC Symbol;Acc:HGNC:3070]
50. RET ENSG00000165731 339 1.524 0.710 0.814 ret proto-oncogene [Source:HGNC Symbol;Acc:HGNC:9967]
51. SEZ6L2 ENSG00000174938 1533 1.522 0.751 0.771 seizure related 6 homolog like 2 [Source:HGNC Symbol;Acc:HGNC:30844]
52. EPB41L1 ENSG00000088367 2310 1.515 0.779 0.736 erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
53. FAIM2 ENSG00000135472 687 1.507 0.758 0.749 Fas apoptotic inhibitory molecule 2 [Source:HGNC Symbol;Acc:HGNC:17067]
54. PGM2L1 ENSG00000165434 4182 1.493 0.791 0.702 phosphoglucomutase 2 like 1 [Source:HGNC Symbol;Acc:HGNC:20898]
55. FABP7 ENSG00000164434 1064 1.49 0.765 0.725 fatty acid binding protein 7 [Source:HGNC Symbol;Acc:HGNC:3562]
56. SRRM4 ENSG00000139767 1060 1.48 0.746 0.734 serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
57. SLC18A3 ENSG00000187714 4213 0.921 0.921 - solute carrier family 18 member A3 [Source:HGNC Symbol;Acc:HGNC:10936]
58. ISL2 ENSG00000159556 593 0.907 0.907 - ISL LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:18524]
59. ELAVL2 ENSG00000107105 5067 0.899 0.899 - ELAV like RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:3313]
60. IRX6 ENSG00000159387 238 0.89 - 0.890 iroquois homeobox 6 [Source:HGNC Symbol;Acc:HGNC:14675]
61. ISL1 ENSG00000016082 4314 0.873 0.873 - ISL LIM homeobox 1 [Source:HGNC Symbol;Acc:HGNC:6132]
62. GNG2 ENSG00000186469 5596 0.873 0.873 - G protein subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:4404]
63. POU2F2 ENSG00000028277 2245 0.869 0.869 - POU class 2 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9213]
64. KLC1 ENSG00000126214 6387 0.867 0.867 - kinesin light chain 1 [Source:HGNC Symbol;Acc:HGNC:6387]
65. CHRNA4 ENSG00000101204 750 0.866 - 0.866 cholinergic receptor nicotinic alpha 4 subunit [Source:HGNC Symbol;Acc:HGNC:1958]
66. YWHAG ENSG00000170027 19111 0.864 0.864 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma [Source:HGNC Symbol;Acc:HGNC:12852]
67. CHGA ENSG00000100604, ENSG00000276781 3476 0.861 0.861 - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
68. NCAM1 ENSG00000149294 14656 0.857 0.857 - neural cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:7656]
69. C5orf58 ENSG00000234511 92 0.855 0.855 - chromosome 5 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:37272]
70. MNX1 ENSG00000130675 512 0.854 0.854 - motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4979]
71. REEP1 ENSG00000068615 2132 0.849 0.849 - receptor accessory protein 1 [Source:HGNC Symbol;Acc:HGNC:25786]
72. SLIT2 ENSG00000145147 3953 0.848 0.848 - slit guidance ligand 2 [Source:HGNC Symbol;Acc:HGNC:11086]
73. CTNNA2 ENSG00000066032 911 0.846 0.846 - catenin alpha 2 [Source:HGNC Symbol;Acc:HGNC:2510]
74. NKAIN3 ENSG00000185942 2284 0.844 0.844 - sodium/potassium transporting ATPase interacting 3 [Source:HGNC Symbol;Acc:HGNC:26829]
75. SCN3A ENSG00000153253 621 0.843 0.843 - sodium voltage-gated channel alpha subunit 3 [Source:HGNC Symbol;Acc:HGNC:10590]
76. DPYSL3 ENSG00000113657 7319 0.836 0.836 - dihydropyrimidinase like 3 [Source:HGNC Symbol;Acc:HGNC:3015]
77. NELL1 ENSG00000165973 2345 0.835 0.835 - neural EGFL like 1 [Source:HGNC Symbol;Acc:HGNC:7750]
78. SNAP25 ENSG00000132639 1533 0.834 0.834 - synaptosome associated protein 25 [Source:HGNC Symbol;Acc:HGNC:11132]
79. CD200 ENSG00000091972 3812 0.832 0.832 - CD200 molecule [Source:HGNC Symbol;Acc:HGNC:7203]
80. FBXL16 ENSG00000127585 196 0.828 - 0.828 F-box and leucine rich repeat protein 16 [Source:HGNC Symbol;Acc:HGNC:14150]
81. SYT1 ENSG00000067715 4379 0.826 0.826 - synaptotagmin 1 [Source:HGNC Symbol;Acc:HGNC:11509]
82. CADPS ENSG00000163618 1353 0.825 0.825 - calcium dependent secretion activator [Source:HGNC Symbol;Acc:HGNC:1426]
83. BNIP3 ENSG00000176171 6986 0.825 0.825 - BCL2 interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:1084]
84. CNST ENSG00000162852 1551 0.825 0.825 - consortin, connexin sorting protein [Source:HGNC Symbol;Acc:HGNC:26486]
85. PAK7 348 0.82 0.820 - p21 (RAC1) activated kinase 7, transcript variant X6
86. GRIA1 ENSG00000155511 273 0.82 0.820 - glutamate ionotropic receptor AMPA type subunit 1 [Source:HGNC Symbol;Acc:HGNC:4571]
87. CHODL ENSG00000154645 212 0.82 0.820 - chondrolectin [Source:HGNC Symbol;Acc:HGNC:17807]
88. CNTN2 ENSG00000184144 4674 0.815 0.815 - contactin 2 [Source:HGNC Symbol;Acc:HGNC:2172]
89. CBLN2 ENSG00000141668 584 0.814 0.814 - cerebellin 2 precursor [Source:HGNC Symbol;Acc:HGNC:1544]
90. NCAN ENSG00000130287 1136 0.814 0.814 - neurocan [Source:HGNC Symbol;Acc:HGNC:2465]
91. YWHAZ ENSG00000164924 56105 0.813 0.813 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:HGNC Symbol;Acc:HGNC:12855]
92. TUBA1A ENSG00000167552 83799 0.81 0.810 - tubulin alpha 1a [Source:HGNC Symbol;Acc:HGNC:20766]
93. KIF21B ENSG00000116852 3406 0.809 0.809 - kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
94. TRIM36 ENSG00000152503 452 0.808 0.808 - tripartite motif containing 36 [Source:HGNC Symbol;Acc:HGNC:16280]
95. CALY ENSG00000130643 78 0.807 - 0.807 calcyon neuron specific vesicular protein [Source:HGNC Symbol;Acc:HGNC:17938]
96. GAB2 ENSG00000033327 1360 0.807 0.807 - GRB2 associated binding protein 2 [Source:HGNC Symbol;Acc:HGNC:14458]
97. CTXN3 ENSG00000205279 84 0.805 0.805 - cortexin 3 [Source:HGNC Symbol;Acc:HGNC:31110]
98. SCN3B ENSG00000166257 491 0.804 0.804 - sodium voltage-gated channel beta subunit 3 [Source:HGNC Symbol;Acc:HGNC:20665]
99. UTS2B ENSG00000188958 280 0.804 0.804 - urotensin 2B [Source:HGNC Symbol;Acc:HGNC:30894]
100. NSG1 ENSG00000168824 2797 0.802 0.802 - neuronal vesicle trafficking associated 1 [Source:HGNC Symbol;Acc:HGNC:18790]

There are 107 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA