Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CRNDE

Gene Name Gene ID Reads Annotation
CRNDE ENSG00000245694 3754 colorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]



Genes with expression patterns similar to CRNDE

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. CRNDE ENSG00000245694 3754 2 1.000 1.000 colorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]
2. SCUBE2 ENSG00000175356 1730 1.718 0.860 0.858 signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
3. HOXB-AS3 ENSG00000233101 1776 1.69 0.863 0.827 HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
4. PDPN ENSG00000162493 5095 1.685 0.825 0.860 podoplanin [Source:HGNC Symbol;Acc:HGNC:29602]
5. RHBDL3 ENSG00000141314 2571 1.666 0.826 0.840 rhomboid like 3 [Source:HGNC Symbol;Acc:HGNC:16502]
6. TKTL1 ENSG00000007350 1212 1.661 0.832 0.829 transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]
7. SYT2 ENSG00000143858 2364 1.653 0.837 0.816 synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
8. POU3F2 ENSG00000184486 2683 1.651 0.814 0.837 POU class 3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9215]
9. HES5 ENSG00000197921, ENSG00000273529 9293 1.648 0.861 0.787 hes family bHLH transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:19764]
10. SLC1A2 ENSG00000110436 1231 1.644 0.852 0.792 solute carrier family 1 member 2 [Source:HGNC Symbol;Acc:HGNC:10940]
11. SOX1 ENSG00000182968 1339 1.638 0.811 0.827 SRY-box 1 [Source:HGNC Symbol;Acc:HGNC:11189]
12. SOX2 ENSG00000181449 19791 1.625 0.797 0.828 SRY-box 2 [Source:HGNC Symbol;Acc:HGNC:11195]
13. SLC2A1 ENSG00000117394 2892 1.62 0.850 0.770 solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]
14. LINC00461 ENSG00000245526 4465 1.611 0.817 0.794 long intergenic non-protein coding RNA 461 [Source:HGNC Symbol;Acc:HGNC:42810]
15. PRDM13 ENSG00000112238 312 1.598 0.812 0.786 PR/SET domain 13 [Source:HGNC Symbol;Acc:HGNC:13998]
16. NRARP ENSG00000198435 1658 1.593 0.800 0.793 NOTCH regulated ankyrin repeat protein [Source:HGNC Symbol;Acc:HGNC:33843]
17. LOC100240734 1898 1.587 0.772 0.815 uncharacterized LOC100240734
18. ARL4A ENSG00000122644 3071 1.586 0.782 0.804 ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
19. TOX3 ENSG00000103460 1758 1.579 0.820 0.759 TOX high mobility group box family member 3 [Source:HGNC Symbol;Acc:HGNC:11972]
20. IRX5 ENSG00000176842 2175 1.574 0.719 0.855 iroquois homeobox 5 [Source:HGNC Symbol;Acc:HGNC:14361]
21. FGFR3 ENSG00000068078 2862 1.566 0.824 0.742 fibroblast growth factor receptor 3 [Source:HGNC Symbol;Acc:HGNC:3690]
22. SOX3 ENSG00000134595 5297 1.565 0.770 0.795 SRY-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]
23. RGS20 ENSG00000147509 282 1.556 0.754 0.802 regulator of G protein signaling 20 [Source:HGNC Symbol;Acc:HGNC:14600]
24. CKB ENSG00000166165 54181 1.555 0.767 0.788 creatine kinase B [Source:HGNC Symbol;Acc:HGNC:1991]
25. CSPG5 ENSG00000114646 558 1.549 0.782 0.767 chondroitin sulfate proteoglycan 5 [Source:HGNC Symbol;Acc:HGNC:2467]
26. FAM181A ENSG00000140067, ENSG00000273533 1757 1.542 0.794 0.748 family with sequence similarity 181 member A [Source:HGNC Symbol;Acc:HGNC:20491]
27. DTX4 ENSG00000110042 2639 1.539 0.717 0.822 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
28. SEMA5B ENSG00000082684 2716 1.538 0.777 0.761 semaphorin 5B [Source:HGNC Symbol;Acc:HGNC:10737]
29. PAX6 ENSG00000007372 3710 1.536 0.776 0.760 paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
30. CRABP1 ENSG00000166426 2178 1.531 0.799 0.732 cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2338]
31. TTYH1 ENSG00000167614, ENSG00000275650, ENSG00000276537, ENSG00000276887 2414 1.52 0.738 0.782 tweety family member 1 [Source:HGNC Symbol;Acc:HGNC:13476]
32. RND2 ENSG00000108830 3761 1.518 0.737 0.781 Rho family GTPase 2 [Source:HGNC Symbol;Acc:HGNC:18315]
33. ASRGL1 ENSG00000162174 4293 1.503 0.731 0.772 asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
34. TSPAN18 ENSG00000157570 9391 1.493 0.718 0.775 tetraspanin 18 [Source:HGNC Symbol;Acc:HGNC:20660]
35. LINC01158 1332 1.492 0.709 0.783 long intergenic non-protein coding RNA 1158, transcript variant 4
36. MYCL ENSG00000116990 1128 1.489 0.701 0.788 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
37. FZD10 ENSG00000111432 608 1.487 0.777 0.710 frizzled class receptor 10 [Source:HGNC Symbol;Acc:HGNC:4039]
38. HS6ST1 ENSG00000136720 4974 1.477 0.751 0.726 heparan sulfate 6-O-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5201]
39. NRIP3 ENSG00000175352 238 1.476 0.715 0.761 nuclear receptor interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:1167]
40. GLDC ENSG00000178445 513 1.473 0.762 0.711 glycine decarboxylase [Source:HGNC Symbol;Acc:HGNC:4313]
41. PAX3 ENSG00000135903 1126 1.47 0.722 0.748 paired box 3 [Source:HGNC Symbol;Acc:HGNC:8617]
42. MSI1 ENSG00000135097 6935 1.464 0.756 0.708 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
43. SRGAP3 ENSG00000196220 5297 1.452 0.723 0.729 SLIT-ROBO Rho GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:19744]
44. FLJ12825 ENSG00000248265 822 1.451 0.704 0.747 uncharacterized LOC440101 [Source:NCBI gene;Acc:440101]
45. NEDD9 ENSG00000111859 1509 1.45 0.742 0.708 neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]
46. IGFBPL1 ENSG00000137142 3283 1.436 0.735 0.701 insulin like growth factor binding protein like 1 [Source:HGNC Symbol;Acc:HGNC:20081]
47. ZBTB16 ENSG00000109906 287 1.428 0.725 0.703 zinc finger and BTB domain containing 16 [Source:HGNC Symbol;Acc:HGNC:12930]
48. AGO1 ENSG00000092847 2525 1.42 0.711 0.709 argonaute 1, RISC catalytic component [Source:HGNC Symbol;Acc:HGNC:3262]
49. DLL1 ENSG00000198719, ENSG00000275555 1642 0.851 0.851 - delta like canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2908]
50. AXIN2 ENSG00000168646 2778 0.834 0.834 - axin 2 [Source:HGNC Symbol;Acc:HGNC:904]
51. GBX2 ENSG00000168505 227 0.83 - 0.830 gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]
52. PTPRZ1 ENSG00000106278 1326 0.821 - 0.821 protein tyrosine phosphatase, receptor type Z1 [Source:HGNC Symbol;Acc:HGNC:9685]
53. IRX3 ENSG00000177508 7140 0.805 - 0.805 iroquois homeobox 3 [Source:HGNC Symbol;Acc:HGNC:14360]
54. OTP ENSG00000171540 179 0.801 0.801 - orthopedia homeobox [Source:HGNC Symbol;Acc:HGNC:8518]
55. WSCD1 ENSG00000179314 1121 0.801 - 0.801 WSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29060]
56. ZIC3 ENSG00000156925 420 0.797 0.797 - Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
57. ZIC4 ENSG00000174963 2667 0.791 0.791 - Zic family member 4 [Source:HGNC Symbol;Acc:HGNC:20393]
58. FGF19 ENSG00000162344 241 0.789 - 0.789 fibroblast growth factor 19 [Source:HGNC Symbol;Acc:HGNC:3675]
59. FAM167A ENSG00000154319 299 0.788 0.788 - family with sequence similarity 167 member A [Source:HGNC Symbol;Acc:HGNC:15549]
60. DACH1 ENSG00000276644 7568 0.787 0.787 - dachshund family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2663]
61. KAL1 KAL1 2390 0.786 0.786 -
62. WASF3 ENSG00000132970 6777 0.782 0.782 - WAS protein family member 3 [Source:HGNC Symbol;Acc:HGNC:12734]
63. LRRN1 ENSG00000175928 3973 0.779 0.779 - leucine rich repeat neuronal 1 [Source:HGNC Symbol;Acc:HGNC:20980]
64. CELSR2 ENSG00000143126 3566 0.779 - 0.779 cadherin EGF LAG seven-pass G-type receptor 2 [Source:HGNC Symbol;Acc:HGNC:3231]
65. PTN ENSG00000105894 11178 0.775 0.775 - pleiotrophin [Source:HGNC Symbol;Acc:HGNC:9630]
66. LINC01159 ENSG00000229743 210 0.771 - 0.771 long intergenic non-protein coding RNA 1159 [Source:HGNC Symbol;Acc:HGNC:49514]
67. GDF10 ENSG00000266524 711 0.77 0.770 - growth differentiation factor 10 [Source:HGNC Symbol;Acc:HGNC:4215]
68. MIR124-2HG ENSG00000254377 940 0.769 - 0.769 MIR124-2 host gene [Source:HGNC Symbol;Acc:HGNC:48723]
69. CCDC85C ENSG00000205476 3808 0.769 - 0.769 coiled-coil domain containing 85C [Source:HGNC Symbol;Acc:HGNC:35459]
70. SOX21 ENSG00000125285 209 0.768 - 0.768 SRY-box 21 [Source:HGNC Symbol;Acc:HGNC:11197]
71. ZIC5 ENSG00000139800 441 0.765 0.765 - Zic family member 5 [Source:HGNC Symbol;Acc:HGNC:20322]
72. SLITRK2 ENSG00000185985 905 0.762 0.762 - SLIT and NTRK like family member 2 [Source:HGNC Symbol;Acc:HGNC:13449]
73. CTNND2 ENSG00000169862 1640 0.761 0.761 - catenin delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
74. HOXB9 ENSG00000170689 2051 0.753 - 0.753 homeobox B9 [Source:HGNC Symbol;Acc:HGNC:5120]
75. MSX1 ENSG00000163132 2038 0.752 0.752 - msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391]
76. NUAK2 ENSG00000163545 538 0.75 - 0.750 NUAK family kinase 2 [Source:HGNC Symbol;Acc:HGNC:29558]
77. ZIC2 ENSG00000043355 4457 0.75 0.750 - Zic family member 2 [Source:HGNC Symbol;Acc:HGNC:12873]
78. KIAA1147 ENSG00000257093, ENSG00000262599 2599 0.75 0.750 - KIAA1147 [Source:HGNC Symbol;Acc:HGNC:29472]
79. GPRC5B ENSG00000167191 684 0.748 - 0.748 G protein-coupled receptor class C group 5 member B [Source:HGNC Symbol;Acc:HGNC:13308]
80. OLIG3 ENSG00000177468 918 0.746 0.746 - oligodendrocyte transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:18003]
81. APCDD1 ENSG00000154856 2448 0.745 0.745 - APC down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:15718]
82. RASSF2 ENSG00000101265 1157 0.743 - 0.743 Ras association domain family member 2 [Source:HGNC Symbol;Acc:HGNC:9883]
83. NCKAP5 ENSG00000176771 481 0.742 - 0.742 NCK associated protein 5 [Source:HGNC Symbol;Acc:HGNC:29847]
84. CCND1 ENSG00000110092 8014 0.74 - 0.740 cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]
85. HES6 ENSG00000144485 4284 0.739 0.739 - hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]
86. TMEM2 4480 0.736 0.736 - transmembrane protein 2, transcript variant X1
87. POU4F2 ENSG00000151615 74 0.733 - 0.733 POU class 4 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9219]
88. ZIC1 ENSG00000152977 18260 0.73 0.730 - Zic family member 1 [Source:HGNC Symbol;Acc:HGNC:12872]
89. NPAS3 ENSG00000151322 1043 0.729 - 0.729 neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
90. CDH4 ENSG00000179242, ENSG00000280641 1069 0.728 - 0.728 cadherin 4 [Source:HGNC Symbol;Acc:HGNC:1763]
91. DPYSL5 ENSG00000157851 6855 0.726 - 0.726 dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]
92. PAX7 ENSG00000009709 810 0.726 - 0.726 paired box 7 [Source:HGNC Symbol;Acc:HGNC:8621]
93. DCLK2 ENSG00000170390 3503 0.725 0.725 - doublecortin like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19002]
94. FAM107A ENSG00000168309 211 0.725 - 0.725 family with sequence similarity 107 member A [Source:HGNC Symbol;Acc:HGNC:30827]
95. ARL4C ENSG00000188042 5437 0.723 - 0.723 ADP ribosylation factor like GTPase 4C [Source:HGNC Symbol;Acc:HGNC:698]
96. ROBO3 ENSG00000154134 1085 0.723 - 0.723 roundabout guidance receptor 3 [Source:HGNC Symbol;Acc:HGNC:13433]
97. DCC ENSG00000187323 538 0.723 0.723 - DCC netrin 1 receptor [Source:HGNC Symbol;Acc:HGNC:2701]
98. FZD3 ENSG00000104290 11650 0.722 0.722 - frizzled class receptor 3 [Source:HGNC Symbol;Acc:HGNC:4041]
99. GAD2 ENSG00000136750 107 0.722 0.722 - glutamate decarboxylase 2 [Source:HGNC Symbol;Acc:HGNC:4093]
100. TMEM257 484 0.721 0.721 - transmembrane protein 257

There are 13 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA