Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CCDC88A

Gene Name Gene ID Reads Annotation
CCDC88A ENSG00000115355 6649 coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]



Genes with expression patterns similar to CCDC88A

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. CCDC88A ENSG00000115355 6649 2 1.000 1.000 coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]
2. ATRX ENSG00000085224 27422 0.895 - 0.895 ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
3. ZFHX4 ENSG00000091656 12505 0.883 - 0.883 zinc finger homeobox 4 [Source:HGNC Symbol;Acc:HGNC:30939]
4. PHIP ENSG00000146247 9731 0.874 - 0.874 pleckstrin homology domain interacting protein [Source:HGNC Symbol;Acc:HGNC:15673]
5. TCF4 ENSG00000196628 15567 0.87 - 0.870 transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:11634]
6. CHD9 ENSG00000177200 17642 0.869 - 0.869 chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
7. CEP290 ENSG00000198707 1212 0.869 - 0.869 centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]
8. TBL1XR1 ENSG00000177565 10246 0.866 - 0.866 transducin beta like 1 X-linked receptor 1 [Source:HGNC Symbol;Acc:HGNC:29529]
9. ANKRD12 ENSG00000101745 7317 0.858 - 0.858 ankyrin repeat domain 12 [Source:HGNC Symbol;Acc:HGNC:29135]
10. PRPF40A ENSG00000196504 9481 0.857 - 0.857 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
11. KIF5B ENSG00000170759 16732 0.855 - 0.855 kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
12. SLC38A2 ENSG00000134294 18805 0.854 - 0.854 solute carrier family 38 member 2 [Source:HGNC Symbol;Acc:HGNC:13448]
13. PCDH7 ENSG00000169851 5460 0.854 - 0.854 protocadherin 7 [Source:HGNC Symbol;Acc:HGNC:8659]
14. GCC2 ENSG00000135968 2012 0.845 - 0.845 GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
15. AKAP9 ENSG00000127914 5166 0.843 - 0.843 A-kinase anchoring protein 9 [Source:HGNC Symbol;Acc:HGNC:379]
16. ZNF292 ENSG00000188994 11216 0.842 - 0.842 zinc finger protein 292 [Source:HGNC Symbol;Acc:HGNC:18410]
17. PPP3CA ENSG00000138814 2616 0.84 - 0.840 protein phosphatase 3 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9314]
18. RAD50 ENSG00000113522 3743 0.84 - 0.840 RAD50 double strand break repair protein [Source:HGNC Symbol;Acc:HGNC:9816]
19. UBE3A ENSG00000114062 9252 0.84 - 0.840 ubiquitin protein ligase E3A [Source:HGNC Symbol;Acc:HGNC:12496]
20. ZBTB44 ENSG00000196323 6946 0.839 - 0.839 zinc finger and BTB domain containing 44 [Source:HGNC Symbol;Acc:HGNC:25001]
21. ZNF644 ENSG00000122482 3186 0.838 - 0.838 zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
22. ROCK1 ENSG00000067900 3375 0.838 - 0.838 Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]
23. RB1CC1 ENSG00000023287 3626 0.833 - 0.833 RB1 inducible coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:15574]
24. SEC62 ENSG00000008952 15823 0.832 - 0.832 SEC62 homolog, preprotein translocation factor [Source:HGNC Symbol;Acc:HGNC:11846]
25. CCAR1 ENSG00000060339 27115 0.83 - 0.830 cell division cycle and apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:24236]
26. SP3 ENSG00000172845 6798 0.828 - 0.828 Sp3 transcription factor [Source:HGNC Symbol;Acc:HGNC:11208]
27. DCP2 ENSG00000172795 5680 0.823 - 0.823 decapping mRNA 2 [Source:HGNC Symbol;Acc:HGNC:24452]
28. PPM1A ENSG00000100614 8709 0.822 - 0.822 protein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]
29. BPTF ENSG00000171634 9128 0.821 - 0.821 bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
30. PPIG ENSG00000138398 9384 0.818 - 0.818 peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
31. ZNF518A ENSG00000177853 2730 0.818 - 0.818 zinc finger protein 518A [Source:HGNC Symbol;Acc:HGNC:29009]
32. KRCC1 ENSG00000172086 2251 0.817 - 0.817 lysine rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:28039]
33. ZMYM2 ENSG00000121741 4271 0.814 - 0.814 zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
34. SMC4 ENSG00000113810 14567 0.813 - 0.813 structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]
35. ATP2B1 ENSG00000070961 8805 0.813 - 0.813 ATPase plasma membrane Ca2+ transporting 1 [Source:HGNC Symbol;Acc:HGNC:814]
36. ZFR ENSG00000056097 6491 0.812 - 0.812 zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
37. USP47 ENSG00000170242 5618 0.81 - 0.810 ubiquitin specific peptidase 47 [Source:HGNC Symbol;Acc:HGNC:20076]
38. DNAJB14 ENSG00000164031 2586 0.809 - 0.809 DnaJ heat shock protein family (Hsp40) member B14 [Source:HGNC Symbol;Acc:HGNC:25881]
39. RBBP6 ENSG00000122257 7686 0.809 - 0.809 RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
40. PPP2R5E ENSG00000154001 3818 0.807 - 0.807 protein phosphatase 2 regulatory subunit B'epsilon [Source:HGNC Symbol;Acc:HGNC:9313]
41. MED13 ENSG00000108510 4518 0.804 - 0.804 mediator complex subunit 13 [Source:HGNC Symbol;Acc:HGNC:22474]
42. KIAA2026 ENSG00000183354 6074 0.804 - 0.804 KIAA2026 [Source:HGNC Symbol;Acc:HGNC:23378]
43. KIAA1033 937 0.804 - 0.804 KIAA1033, transcript variant X6
44. MAP9 ENSG00000164114 2246 0.803 - 0.803 microtubule associated protein 9 [Source:HGNC Symbol;Acc:HGNC:26118]
45. MALAT1 ENSG00000251562 82061 0.803 - 0.803 metastasis associated lung adenocarcinoma transcript 1 [Source:HGNC Symbol;Acc:HGNC:29665]
46. CUL5 ENSG00000166266 3777 0.802 - 0.802 cullin 5 [Source:HGNC Symbol;Acc:HGNC:2556]
47. ENAH ENSG00000154380 34591 0.8 - 0.800 ENAH, actin regulator [Source:HGNC Symbol;Acc:HGNC:18271]
48. AZIN1 ENSG00000155096 7504 0.8 - 0.800 antizyme inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:16432]
49. NIPBL ENSG00000164190 4262 0.8 - 0.800 NIPBL, cohesin loading factor [Source:HGNC Symbol;Acc:HGNC:28862]
50. PAPD5 3995 0.799 - 0.799 PAP associated domain containing 5, transcript variant X4
51. CSRNP3 ENSG00000178662 2914 0.799 - 0.799 cysteine and serine rich nuclear protein 3 [Source:HGNC Symbol;Acc:HGNC:30729]
52. SUZ12 ENSG00000178691 6660 0.799 - 0.799 SUZ12, polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:17101]
53. RPS6KA5 ENSG00000100784 690 0.799 - 0.799 ribosomal protein S6 kinase A5 [Source:HGNC Symbol;Acc:HGNC:10434]
54. ARID4B ENSG00000054267 4826 0.799 - 0.799 AT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]
55. CNTN4 ENSG00000144619 2198 0.799 - 0.799 contactin 4 [Source:HGNC Symbol;Acc:HGNC:2174]
56. KMT2C ENSG00000055609 2534 0.798 - 0.798 lysine methyltransferase 2C [Source:HGNC Symbol;Acc:HGNC:13726]
57. ARRDC3 ENSG00000113369 19152 0.798 - 0.798 arrestin domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29263]
58. MAP3K2 ENSG00000169967 2952 0.797 - 0.797 mitogen-activated protein kinase kinase kinase 2 [Source:HGNC Symbol;Acc:HGNC:6854]
59. PRKG1 ENSG00000185532 1634 0.794 - 0.794 protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
60. PTEN ENSG00000171862, ENSG00000284792 8446 0.793 - 0.793 phosphatase and tensin homolog [Source:HGNC Symbol;Acc:HGNC:9588]
61. SEC63 ENSG00000025796 6817 0.791 - 0.791 SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
62. MED13L ENSG00000123066 3218 0.791 - 0.791 mediator complex subunit 13 like [Source:HGNC Symbol;Acc:HGNC:22962]
63. REST ENSG00000084093 6739 0.789 - 0.789 RE1 silencing transcription factor [Source:HGNC Symbol;Acc:HGNC:9966]
64. ETV1 ENSG00000006468 3169 0.787 - 0.787 ETS variant 1 [Source:HGNC Symbol;Acc:HGNC:3490]
65. RBM27 ENSG00000091009 3201 0.784 - 0.784 RNA binding motif protein 27 [Source:HGNC Symbol;Acc:HGNC:29243]
66. NUFIP2 ENSG00000108256 6333 0.783 - 0.783 NUFIP2, FMR1 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:17634]
67. SMC2 ENSG00000136824 5127 0.783 - 0.783 structural maintenance of chromosomes 2 [Source:HGNC Symbol;Acc:HGNC:14011]
68. CCNG2 ENSG00000138764 6322 0.781 - 0.781 cyclin G2 [Source:HGNC Symbol;Acc:HGNC:1593]
69. EIF3E ENSG00000104408 18921 0.781 - 0.781 eukaryotic translation initiation factor 3 subunit E [Source:HGNC Symbol;Acc:HGNC:3277]
70. GOLGA4 ENSG00000144674 3716 0.78 - 0.780 golgin A4 [Source:HGNC Symbol;Acc:HGNC:4427]
71. CLOCK ENSG00000134852 6285 0.78 - 0.780 clock circadian regulator [Source:HGNC Symbol;Acc:HGNC:2082]
72. CEBPZ ENSG00000115816 4024 0.778 - 0.778 CCAAT enhancer binding protein zeta [Source:HGNC Symbol;Acc:HGNC:24218]
73. PJA2 ENSG00000198961 6641 0.777 - 0.777 praja ring finger ubiquitin ligase 2 [Source:HGNC Symbol;Acc:HGNC:17481]
74. LARP7 ENSG00000174720 4968 0.777 - 0.777 La ribonucleoprotein domain family member 7 [Source:HGNC Symbol;Acc:HGNC:24912]
75. YTHDF3 ENSG00000185728 6048 0.777 - 0.777 YTH N6-methyladenosine RNA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:26465]
76. USP16 ENSG00000156256 3161 0.776 - 0.776 ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]
77. PGAP1 ENSG00000197121 3543 0.775 - 0.775 post-GPI attachment to proteins 1 [Source:HGNC Symbol;Acc:HGNC:25712]
78. ZNF148 ENSG00000163848 2766 0.775 - 0.775 zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
79. KMT2E ENSG00000005483 4281 0.774 - 0.774 lysine methyltransferase 2E [Source:HGNC Symbol;Acc:HGNC:18541]
80. RAD21 ENSG00000164754 25784 0.774 - 0.774 RAD21 cohesin complex component [Source:HGNC Symbol;Acc:HGNC:9811]
81. CEP85L ENSG00000111860 726 0.772 - 0.772 centrosomal protein 85 like [Source:HGNC Symbol;Acc:HGNC:21638]
82. E2F3 ENSG00000112242 3842 0.772 - 0.772 E2F transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:3115]
83. PCDH17 ENSG00000118946 3309 0.77 - 0.770 protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
84. MIS18BP1 ENSG00000129534 2016 0.769 - 0.769 MIS18 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:20190]
85. CADM1 ENSG00000182985 19971 0.769 - 0.769 cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5951]
86. PHF3 ENSG00000118482 2754 0.769 - 0.769 PHD finger protein 3 [Source:HGNC Symbol;Acc:HGNC:8921]
87. MAP3K1 ENSG00000095015 8341 0.769 - 0.769 mitogen-activated protein kinase kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:6848]
88. ARID4A ENSG00000032219 2224 0.768 - 0.768 AT-rich interaction domain 4A [Source:HGNC Symbol;Acc:HGNC:9885]
89. RFX7 ENSG00000181827 5171 0.768 - 0.768 regulatory factor X7 [Source:HGNC Symbol;Acc:HGNC:25777]
90. CETN3 ENSG00000153140 2027 0.768 - 0.768 centrin 3 [Source:HGNC Symbol;Acc:HGNC:1868]
91. SPIN1 ENSG00000106723 7283 0.767 - 0.767 spindlin 1 [Source:HGNC Symbol;Acc:HGNC:11243]
92. SRSF11 ENSG00000116754 17402 0.765 - 0.765 serine and arginine rich splicing factor 11 [Source:HGNC Symbol;Acc:HGNC:10782]
93. SSFA2 2558 0.764 - 0.764 sperm specific antigen 2, transcript variant X10
94. MMP16 ENSG00000156103 597 0.764 - 0.764 matrix metallopeptidase 16 [Source:HGNC Symbol;Acc:HGNC:7162]
95. Sep-07 Sep-07 16686 0.764 - 0.764
96. RNF111 ENSG00000157450 1792 0.763 - 0.763 ring finger protein 111 [Source:HGNC Symbol;Acc:HGNC:17384]
97. TAX1BP1 ENSG00000106052 11514 0.763 - 0.763 Tax1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11575]
98. EPC1 ENSG00000120616 7342 0.763 - 0.763 enhancer of polycomb homolog 1 [Source:HGNC Symbol;Acc:HGNC:19876]
99. KPNA3 ENSG00000102753 4370 0.762 - 0.762 karyopherin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6396]
100. ADD3 ENSG00000148700 7732 0.762 - 0.762 adducin 3 [Source:HGNC Symbol;Acc:HGNC:245]

There are 153 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA