Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s9.

Sample reads: 133,405. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16387.46 122840.14
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1490.44 11172.31 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. hmga1a ENSDARG00000028335 1276.53 9568.85 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
4. zgc:112425 zgc:112425 1255.57 9411.73
5. ptmab ENSDARG00000101766 1186.02 8890.39 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
6. tmsb4x ENSDARG00000077777 934.71 7006.57 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. mt-co2 ENSDARG00000063908 854.44 6404.87 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. actb2 ENSDARG00000037870 821.80 6160.20 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. ppiaa ENSDARG00000009212 791.55 5933.45 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
10. eef1a1l1 ENSDARG00000020850 740.58 5551.38 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. AL954137.2 ENSDARG00000114408 730.09 5472.74
12. mt-nd2 ENSDARG00000063899 675.07 5060.31 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. si:dkey-151g10.6 si:dkey-151g10.6 653.63 4899.60
14. hmgn2 ENSDARG00000099572 586.22 4394.30 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
15. hspa8 ENSDARG00000068992, ENSDARG00000114726 567.88 4256.82 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
16. mt-co3 ENSDARG00000063912 545.96 4092.51 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. mt-nd4 ENSDARG00000063917 490.94 3680.08 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 476.65 3572.96 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. mt-atp6 ENSDARG00000063911 473.31 3547.92 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
20. h3f3a 440.44 3301.53 H3 histone, family 3A, transcript variant X1
21. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 374.93 2810.47 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
22. hnrnpab hnrnpab 374.69 2808.67
23. actb1 ENSDARG00000037746, ENSDARG00000113649 372.79 2794.43 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
24. cirbp cirbp 371.12 2781.91
25. si:dkeyp-86f7.3 si:dkeyp-86f7.3 369.93 2772.99
26. rpl18a ENSDARG00000025073 358.26 2685.51 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
27. id1 ENSDARG00000040764 352.07 2639.11 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
28. pcna ENSDARG00000054155 346.59 2598.03 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
29. rpl8 ENSDARG00000014867 343.49 2574.80 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. zgc:123194 zgc:123194 339.20 2542.64
31. pabpc1a ENSDARG00000017219 329.20 2467.68 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
32. hsp90ab1 ENSDARG00000029150 315.62 2365.88 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
33. rpl26 ENSDARG00000102317 307.52 2305.16 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
34. rpl23 ENSDARG00000053457 305.14 2287.32 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
35. rpl10a ENSDARG00000042905, ENSDARG00000115649 301.57 2260.56 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
36. btf3 ENSDARG00000035400, ENSDARG00000116462 298.95 2240.92 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
37. cfl1 ENSDARG00000021124 292.99 2196.25 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
38. khdrbs1a ENSDARG00000052856 290.85 2180.21 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
39. mt-nd1 ENSDARG00000063895 288.70 2164.09 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
40. si:ch1073-429i10.3 283.70 2126.61 si:ch1073-429i10.3, transcript variant X2
41. rpl21 ENSDARG00000010516, ENSDARG00000110263 282.51 2117.69 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
42. rplp1 ENSDARG00000021864 281.32 2108.77 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
43. hnrnpa0a ENSDARG00000089302 280.37 2101.65 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
44. rpl11 ENSDARG00000043509 278.70 2089.13 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
45. rpsa ENSDARG00000019181 272.03 2039.13 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
46. rpl9 ENSDARG00000037350, ENSDARG00000112384 267.03 2001.65 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
47. marcksb ENSDARG00000008803 265.84 1992.73 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
48. rps23 ENSDARG00000021838 265.36 1989.13 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
49. mt-cyb ENSDARG00000063924 261.07 1956.98 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
50. rps27a ENSDARG00000032725, ENSDARG00000114059 256.78 1924.82 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
51. ptmaa ENSDARG00000021113, ENSDARG00000110479 252.26 1890.94 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
52. marcksl1b ENSDARG00000035715 242.01 1814.10 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
53. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 230.82 1730.22 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
54. fkbp1aa ENSDARG00000022684 230.10 1724.83 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
55. top1l ENSDARG00000070545 219.39 1644.54 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
56. TUBA1A ENSDARG00000001889 217.96 1633.82 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
57. rps14 ENSDARG00000036629 217.72 1632.03 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
58. rps2 ENSDARG00000077291 215.34 1614.19 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
59. ran ENSDARG00000057026 208.43 1562.39 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
60. rpl19 ENSDARG00000013307 206.05 1544.55 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
61. nucks1a ENSDARG00000078473 203.19 1523.11 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
62. h3f3d ENSDARG00000045248 197.95 1483.83 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
63. rpl36a ENSDARG00000058105, ENSDARG00000112656 197.95 1483.83 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
64. rps19 ENSDARG00000030602 194.14 1455.27 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
65. eif5a ENSDARG00000017235 192.94 1446.28 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. rps4x ENSDARG00000014690 190.80 1430.23 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
67. pbx4 ENSDARG00000052150 190.56 1428.43 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
68. rps20 ENSDARG00000036044 186.51 1398.08 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
69. rplp0 ENSDARG00000051783 186.28 1396.35 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
70. rps12 ENSDARG00000036875, ENSDARG00000115157 185.08 1387.36 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
71. pnrc2 ENSDARG00000053291, ENSDARG00000112537 181.75 1362.40 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
72. rpl15 ENSDARG00000009285 181.27 1358.80 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
73. rpl36 ENSDARG00000100588 181.27 1358.80 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
74. rps26l ENSDARG00000030408 181.03 1357.00 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
75. tubb4b ENSDARG00000002344 180.56 1353.47 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
76. ubc ENSDARG00000102632 180.56 1353.47 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
77. rpl27 ENSDARG00000015128 179.37 1344.55 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
78. ccnd1 ENSDARG00000101637 177.94 1333.84 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
79. rpl5b ENSDARG00000015862, ENSDARG00000109661 175.79 1317.72 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
80. rps27.1 ENSDARG00000023298 175.08 1312.40 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
81. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 172.94 1296.36 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
82. calm2a ENSDARG00000031427, ENSDARG00000111871 167.93 1258.80 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
83. marcksl1a ENSDARG00000039034 163.41 1224.92 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
84. rplp2 ENSDARG00000101406 162.45 1217.72 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
85. rps6 ENSDARG00000019778 162.45 1217.72 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
86. seta ENSDARG00000031495 161.74 1212.40 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
87. rps9 ENSDARG00000011405, ENSDARG00000113248 161.50 1210.60 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
88. rps3 ENSDARG00000103007 160.79 1205.28 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
89. rpl6 ENSDARG00000058451 160.31 1201.68 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
90. rps15 ENSDARG00000070849, ENSDARG00000110979 158.88 1190.96 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
91. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 156.26 1171.32 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
92. ddx5 ENSDARG00000038068 155.55 1166.00 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
93. ppiab ENSDARG00000103994 154.12 1155.28 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
94. fabp3 ENSDARG00000023290 152.45 1142.76 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
95. h2afvb ENSDARG00000116491 151.97 1139.16 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
96. mt-co1 ENSDARG00000063905 150.78 1130.24 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
97. syncrip ENSDARG00000040184 148.40 1112.40 synaptotagmin binding, cytoplasmic RNA interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4862]
98. rps15a ENSDARG00000010160 148.16 1110.60 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
99. celf2 ENSDARG00000002131, ENSDARG00000110267 147.92 1108.81 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
100. tuba8l ENSDARG00000042708 147.21 1103.48 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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