Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s8.

Sample reads: 133,415. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17162.17 128637.11
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1263.98 9474.02 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. ptmab ENSDARG00000101766 1231.06 9227.27 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
4. hmga1a ENSDARG00000028335 1129.91 8469.11 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. zgc:112425 zgc:112425 1071.62 8032.21
6. eef1a1l1 ENSDARG00000020850 926.68 6945.83 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
7. ppiaa ENSDARG00000009212 857.05 6423.92 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. actb2 ENSDARG00000037870 811.04 6079.06 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. mt-co2 ENSDARG00000063908 761.26 5705.94 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. AL954137.2 ENSDARG00000114408 644.83 4833.25
11. tmsb4x ENSDARG00000077777 627.19 4701.03 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. si:dkey-151g10.6 si:dkey-151g10.6 600.88 4503.83
13. eef2b ENSDARG00000100371, ENSDARG00000109247 597.41 4477.82 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
14. mt-nd4 ENSDARG00000063917 595.05 4460.13 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. hspa8 ENSDARG00000068992, ENSDARG00000114726 594.42 4455.41 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
16. mt-nd2 ENSDARG00000063899 575.98 4317.19 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
17. hmgn2 ENSDARG00000099572 565.27 4236.92 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
18. mt-co3 ENSDARG00000063912 485.71 3640.58 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. rplp1 ENSDARG00000021864 476.10 3568.55 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
20. mt-atp6 ENSDARG00000063911 442.54 3317.01 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. cryba2b ENSDARG00000041925 414.66 3108.04 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324]
22. actb1 ENSDARG00000037746, ENSDARG00000113649 411.51 3084.43 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
23. rpl8 ENSDARG00000014867 400.95 3005.28 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
24. h3f3a 390.87 2929.72 H3 histone, family 3A, transcript variant X1
25. cryba1b ENSDARG00000053875 390.71 2928.52 crystallin, beta A1b [Source:ZFIN;Acc:ZDB-GENE-040718-326]
26. hsp90ab1 ENSDARG00000029150 385.04 2886.02 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
27. pabpc1a ENSDARG00000017219 384.25 2880.10 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
28. hnrnpab hnrnpab 379.37 2843.53
29. cirbp cirbp 377.95 2832.88
30. rpl10a ENSDARG00000042905, ENSDARG00000115649 361.88 2712.43 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
31. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 349.91 2622.71 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
32. rpl9 ENSDARG00000037350, ENSDARG00000112384 347.54 2604.95 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
33. rpl21 ENSDARG00000010516, ENSDARG00000110263 342.82 2569.57 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
34. si:dkeyp-86f7.3 si:dkeyp-86f7.3 342.35 2566.05
35. rpl23 ENSDARG00000053457 336.67 2523.47 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
36. btf3 ENSDARG00000035400, ENSDARG00000116462 324.86 2434.95 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
37. mt-nd1 ENSDARG00000063895 323.76 2426.71 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
38. rpl18a ENSDARG00000025073 323.60 2425.51 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
39. pcna ENSDARG00000054155 323.28 2423.11 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
40. id1 ENSDARG00000040764 321.55 2410.14 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
41. rpl26 ENSDARG00000102317 319.19 2392.45 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
42. zgc:123194 zgc:123194 316.51 2372.36
43. rps23 ENSDARG00000021838 310.36 2326.27 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
44. rpl11 ENSDARG00000043509 308.00 2308.58 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
45. cfl1 ENSDARG00000021124 300.75 2254.24 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
46. crygn2 ENSDARG00000030411 300.60 2253.11 crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
47. rpsa ENSDARG00000019181 289.25 2168.04 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
48. si:ch1073-429i10.3 285.31 2138.51 si:ch1073-429i10.3, transcript variant X2
49. rpl36a ENSDARG00000058105, ENSDARG00000112656 279.48 2094.81 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
50. khdrbs1a ENSDARG00000052856 268.93 2015.73 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
51. mt-cyb ENSDARG00000063924 268.46 2012.21 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
52. rps14 ENSDARG00000036629 266.88 2000.37 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
53. cryba1l1 ENSDARG00000032929 260.42 1951.95 crystallin, beta A1, like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-249]
54. hnrnpa0a ENSDARG00000089302 259.63 1946.03 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
55. marcksl1b ENSDARG00000035715 259.00 1941.31 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
56. rpl19 ENSDARG00000013307 254.59 1908.25 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
57. rps26l ENSDARG00000030408 251.13 1882.32 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
58. rps27a ENSDARG00000032725, ENSDARG00000114059 246.87 1850.39 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
59. crybb1 ENSDARG00000068507 245.93 1843.34 crystallin, beta B1 [Source:ZFIN;Acc:ZDB-GENE-010813-1]
60. rps19 ENSDARG00000030602 245.30 1838.62 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
61. rps20 ENSDARG00000036044 244.98 1836.22 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
62. fkbp1aa ENSDARG00000022684 242.30 1816.13 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
63. eif5a ENSDARG00000017235 241.52 1810.29 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
64. rplp0 ENSDARG00000051783 241.04 1806.69 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
65. rps2 ENSDARG00000077291 240.57 1803.17 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
66. TUBA1A ENSDARG00000001889 231.12 1732.33 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
67. marcksb ENSDARG00000008803 227.97 1708.72 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
68. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 223.71 1676.79 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
69. ran ENSDARG00000057026 221.98 1663.83 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
70. rps6 ENSDARG00000019778 221.67 1661.50 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
71. rps12 ENSDARG00000036875, ENSDARG00000115157 220.41 1652.06 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
72. rpl15 ENSDARG00000009285 219.15 1642.61 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
73. rpl27 ENSDARG00000015128 218.04 1634.29 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
74. ptmaa ENSDARG00000021113, ENSDARG00000110479 216.94 1626.05 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
75. rpl5b ENSDARG00000015862, ENSDARG00000109661 210.95 1581.15 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
76. rps27.1 ENSDARG00000023298 207.17 1552.82 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
77. rps4x ENSDARG00000014690 205.12 1537.45 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
78. tubb4b ENSDARG00000002344 200.71 1504.40 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
79. marcksl1a ENSDARG00000039034 195.99 1469.02 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
80. rps9 ENSDARG00000011405, ENSDARG00000113248 192.68 1444.21 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
81. rpl36 ENSDARG00000100588 192.05 1439.49 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
82. rps15 ENSDARG00000070849, ENSDARG00000110979 190.94 1431.17 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
83. rps3 ENSDARG00000103007 183.70 1376.90 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
84. h3f3d ENSDARG00000045248 182.12 1365.06 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
85. rps5 ENSDARG00000043453 181.18 1358.01 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
86. rplp2 ENSDARG00000101406 178.50 1337.93 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
87. rpl18 ENSDARG00000029533 178.18 1335.53 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
88. top1l ENSDARG00000070545 177.40 1329.68 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
89. anp32a ENSDARG00000006487 175.98 1319.04 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
90. rpl7 ENSDARG00000007320 174.40 1307.20 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
91. ppiab ENSDARG00000103994 173.77 1302.47 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
92. alyref ENSDARG00000077732 172.04 1289.51 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
93. ddx5 ENSDARG00000038068 169.83 1272.94 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
94. rps10 ENSDARG00000034897 168.57 1263.50 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
95. rps15a ENSDARG00000010160 166.05 1244.61 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
96. rpl6 ENSDARG00000058451 164.95 1236.36 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
97. rplp2l ENSDARG00000011201 164.32 1231.64 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
98. mt-co1 ENSDARG00000063905 160.54 1203.31 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
99. faua ENSDARG00000099022 160.38 1202.11 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
100. seta ENSDARG00000031495 159.44 1195.06 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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