Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s7.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14041.63 105254.98
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1331.27 9979.10 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. ptmab ENSDARG00000101766 1181.08 8853.28 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
4. hmga1a ENSDARG00000028335 1169.38 8765.58 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. zgc:112425 zgc:112425 1118.87 8386.96
6. eef1a1l1 ENSDARG00000020850 968.68 7261.15 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
7. cryba2b ENSDARG00000041925 965.49 7237.24 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324]
8. cryba1b ENSDARG00000053875 916.58 6870.61 crystallin, beta A1b [Source:ZFIN;Acc:ZDB-GENE-040718-326]
9. actb2 ENSDARG00000037870 862.08 6462.09 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. ppiaa ENSDARG00000009212 856.77 6422.28 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. crygn2 ENSDARG00000030411 750.70 5627.19 crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
12. mt-co2 ENSDARG00000063908 733.95 5501.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. mt-nd2 ENSDARG00000063899 641.98 4812.23 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. mt-co3 ENSDARG00000063912 598.12 4483.46 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. hspa8 ENSDARG00000068992, ENSDARG00000114726 596.52 4471.47 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
16. hmgn2 ENSDARG00000099572 594.93 4459.55 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
17. AL954137.2 ENSDARG00000114408 590.41 4425.67
18. mt-nd4 ENSDARG00000063917 575.52 4314.05 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. si:dkey-151g10.6 si:dkey-151g10.6 573.93 4302.14
20. cryba1l1 ENSDARG00000032929 563.56 4224.40 crystallin, beta A1, like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-249]
21. tmsb4x ENSDARG00000077777 553.99 4152.67 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
22. eef2b ENSDARG00000100371, ENSDARG00000109247 550.80 4128.75 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
23. mt-atp6 ENSDARG00000063911 527.94 3957.40 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
24. rpl8 ENSDARG00000014867 490.19 3674.43 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
25. crybb1 ENSDARG00000068507 489.13 3666.48 crystallin, beta B1 [Source:ZFIN;Acc:ZDB-GENE-010813-1]
26. rplp1 ENSDARG00000021864 443.93 3327.67 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
27. h3f3a 431.17 3232.02 H3 histone, family 3A, transcript variant X1
28. pabpc1a ENSDARG00000017219 431.17 3232.02 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
29. actb1 ENSDARG00000037746, ENSDARG00000113649 427.98 3208.11 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
30. rpl10a ENSDARG00000042905, ENSDARG00000115649 418.15 3134.42 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
31. cirbp cirbp 387.84 2907.22
32. rpl21 ENSDARG00000010516, ENSDARG00000110263 377.48 2829.56 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
33. rpl23 ENSDARG00000053457 371.10 2781.74 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
34. btf3 ENSDARG00000035400, ENSDARG00000116462 369.24 2767.79 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
35. hnrnpab hnrnpab 368.71 2763.82
36. rpl18a ENSDARG00000025073 365.52 2739.91 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
37. pcna ENSDARG00000054155 361.26 2707.98 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
38. cryba2a ENSDARG00000030349 353.82 2652.21 crystallin, beta A2a [Source:ZFIN;Acc:ZDB-GENE-040625-8]
39. rpl26 ENSDARG00000102317 347.17 2602.36 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
40. si:dkeyp-86f7.3 si:dkeyp-86f7.3 343.72 2576.50
41. mt-nd1 ENSDARG00000063895 342.65 2568.48 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
42. hsp90ab1 ENSDARG00000029150 341.32 2558.51 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
43. rpl9 ENSDARG00000037350, ENSDARG00000112384 339.46 2544.57 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
44. rpl11 ENSDARG00000043509 335.48 2514.73 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
45. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 332.55 2492.77 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
46. id1 ENSDARG00000040764 325.64 2440.97 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
47. rps23 ENSDARG00000021838 324.58 2433.03 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
48. si:ch1073-429i10.3 320.32 2401.09 si:ch1073-429i10.3, transcript variant X2
49. rps27a ENSDARG00000032725, ENSDARG00000114059 313.68 2351.32 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
50. zgc:123194 zgc:123194 308.63 2313.47
51. rpsa ENSDARG00000019181 302.78 2269.62 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
52. rpl19 ENSDARG00000013307 301.45 2259.65 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
53. cfl1 ENSDARG00000021124 296.40 2221.79 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
54. lim2.4 ENSDARG00000015445 293.74 2201.85 lens intrinsic membrane protein 2.4 [Source:ZFIN;Acc:ZDB-GENE-040718-104]
55. hnrnpa0a ENSDARG00000089302 285.50 2140.09 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
56. rpl36a ENSDARG00000058105, ENSDARG00000112656 284.44 2132.14 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
57. marcksl1b ENSDARG00000035715 270.88 2030.50 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
58. rps19 ENSDARG00000030602 269.82 2022.55 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
59. mt-cyb ENSDARG00000063924 267.69 2006.58 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
60. rps2 ENSDARG00000077291 266.89 2000.59 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
61. rps14 ENSDARG00000036629 260.51 1952.76 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
62. rplp0 ENSDARG00000051783 259.72 1946.84 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
63. fkbp1aa ENSDARG00000022684 258.12 1934.85 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
64. eif5a ENSDARG00000017235 256.26 1920.91 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
65. khdrbs1a ENSDARG00000052856 254.66 1908.91 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
66. rpl27 ENSDARG00000015128 254.40 1906.96 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
67. rps6 ENSDARG00000019778 253.07 1896.99 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
68. rps4x ENSDARG00000014690 243.50 1825.26 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
69. ran ENSDARG00000057026 241.90 1813.26 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
70. rps26l ENSDARG00000030408 241.90 1813.26 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
71. rpl5b ENSDARG00000015862, ENSDARG00000109661 237.65 1781.41 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
72. marcksb ENSDARG00000008803 233.66 1751.50 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
73. mipb ENSDARG00000013963 229.94 1723.61 major intrinsic protein of lens fiber b [Source:ZFIN;Acc:ZDB-GENE-050706-86]
74. rps20 ENSDARG00000036044 229.94 1723.61 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
75. rpl18 ENSDARG00000029533 225.16 1687.78 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
76. rpl15 ENSDARG00000009285 222.50 1667.84 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
77. crygm2d8 ENSDARG00000116164 217.18 1627.96 crystallin, gamma M2d8 [Source:ZFIN;Acc:ZDB-GENE-040718-321]
78. rpl36 ENSDARG00000100588 216.92 1626.02 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
79. rps15 ENSDARG00000070849, ENSDARG00000110979 215.32 1614.02 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
80. TUBA1A ENSDARG00000001889 209.21 1568.22 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
81. crygm2d13 ENSDARG00000057460 209.21 1568.22 crystallin, gamma M2d13 [Source:ZFIN;Acc:ZDB-GENE-040718-105]
82. rps12 ENSDARG00000036875, ENSDARG00000115157 205.75 1542.29 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
83. rps9 ENSDARG00000011405, ENSDARG00000113248 205.49 1540.34 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
84. ptmaa ENSDARG00000021113, ENSDARG00000110479 205.22 1538.31 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
85. rps27.1 ENSDARG00000023298 201.50 1510.43 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
86. faua ENSDARG00000099022 200.17 1500.46 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
87. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 200.17 1500.46 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
88. h3f3d ENSDARG00000045248 198.84 1490.49 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
89. rps15a ENSDARG00000010160 197.25 1478.57 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
90. crybb1l1 ENSDARG00000007576 193.52 1450.61 crystallin, beta B1, like 1 [Source:ZFIN;Acc:ZDB-GENE-100112-3]
91. rpl7 ENSDARG00000007320 187.14 1402.79 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
92. rpl6 ENSDARG00000058451 183.16 1372.95 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
93. rps3 ENSDARG00000103007 179.70 1347.02 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
94. rplp2 ENSDARG00000101406 178.11 1335.10 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
95. rps24 ENSDARG00000039347 176.78 1325.13 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
96. ppiab ENSDARG00000103994 174.12 1305.19 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
97. ddx5 ENSDARG00000038068 173.85 1303.17 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
98. tubb4b ENSDARG00000002344 173.32 1299.19 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
99. crybb1l2 ENSDARG00000016793 172.79 1295.22 crystallin, beta B1, like 2 [Source:ZFIN;Acc:ZDB-GENE-070822-18]
100. rps10 ENSDARG00000034897 170.93 1281.28 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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