Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s64.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10881.31 81567.41
2. krt4 ENSDARG00000017624, ENSDARG00000115790 8303.45 62243.51 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2609.53 19561.30 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. col1a1a ENSDARG00000012405, ENSDARG00000116113 2537.16 19018.81 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
5. actb2 ENSDARG00000037870 1442.70 10814.63 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. actb1 ENSDARG00000037746, ENSDARG00000113649 1230.14 9221.25 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
7. mt-nd4 ENSDARG00000063917 777.88 5831.07 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. mt-nd2 ENSDARG00000063899 759.79 5695.46 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. hmga1a ENSDARG00000028335 710.04 5322.53 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
10. cfl1l ENSDARG00000012972 669.34 5017.44 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
11. mt-atp6 ENSDARG00000063911 651.25 4881.84 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. si:dkey-151g10.6 si:dkey-151g10.6 651.25 4881.84
13. and2 ENSDARG00000079302 646.73 4847.95 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
14. ppiaa ENSDARG00000009212 615.07 4610.63 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
15. eef1a1l1 ENSDARG00000020850 606.03 4542.86 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. mt-co2 ENSDARG00000063908 587.93 4407.18 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. and1 ENSDARG00000088514 560.80 4203.81 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
18. cyt1l ENSDARG00000036832 538.19 4034.33 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
19. zgc:112425 zgc:112425 520.10 3898.72
20. icn ENSDARG00000009978 515.57 3864.77 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
21. ptmab ENSDARG00000101766 497.48 3729.16 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
22. id1 ENSDARG00000040764 474.87 3559.67 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
23. mt-co3 ENSDARG00000063912 461.30 3457.95 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
24. krt8 ENSDARG00000058358, ENSDARG00000109279 447.73 3356.23 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
25. zgc:92533 zgc:92533 443.21 3322.35
26. CABZ01074130.1 ENSDARG00000105274 425.12 3186.74
27. col1a1b ENSDARG00000035809 407.03 3051.14 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
28. and3 ENSDARG00000056873 388.94 2915.53 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
29. eef2b ENSDARG00000100371, ENSDARG00000109247 388.94 2915.53 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
30. pfn1 ENSDARG00000088091 384.42 2881.65 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
31. icn2 ENSDARG00000055514 370.85 2779.93 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 352.76 2644.32 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. myl10 ENSDARG00000062592 334.67 2508.72 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
34. rpl23 ENSDARG00000053457 321.10 2407.00 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
35. pabpc1a ENSDARG00000017219 316.58 2373.12 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
36. col1a2 ENSDARG00000020007 307.54 2305.35 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
37. actc1b ENSDARG00000099197 293.97 2203.63 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
38. im:7150988 ENSDARG00000109310 293.97 2203.63 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
39. rpl26 ENSDARG00000102317 293.97 2203.63 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
40. rpl8 ENSDARG00000014867 293.97 2203.63 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
41. pcna ENSDARG00000054155 280.40 2101.91 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
42. rpl18a ENSDARG00000025073 271.35 2034.07 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
43. rpl21 ENSDARG00000010516, ENSDARG00000110263 271.35 2034.07 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
44. mt-cyb ENSDARG00000063924 266.83 2000.18 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
45. myl12.1 ENSDARG00000099766 266.83 2000.18 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
46. tpm3 ENSDARG00000005162 266.83 2000.18 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
47. acta1a ENSDARG00000036371 262.31 1966.30 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
48. rpl9 ENSDARG00000037350, ENSDARG00000112384 262.31 1966.30 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
49. rps23 ENSDARG00000021838 262.31 1966.30 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
50. si:ch1073-429i10.3 253.26 1898.46 si:ch1073-429i10.3, transcript variant X2
51. rps14 ENSDARG00000036629 248.74 1864.58 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
52. btf3 ENSDARG00000035400, ENSDARG00000116462 244.22 1830.70 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. rpl10a ENSDARG00000042905, ENSDARG00000115649 244.22 1830.70 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
54. rpl11 ENSDARG00000043509 230.65 1728.98 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. col2a1a ENSDARG00000069093, ENSDARG00000111202 221.61 1661.21 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
56. mt-nd1 ENSDARG00000063895 221.61 1661.21 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
57. rpl27 ENSDARG00000015128 221.61 1661.21 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
58. rpsa ENSDARG00000019181 221.61 1661.21 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
59. ywhaba ENSDARG00000013078 221.61 1661.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-6583]
60. AL954137.2 ENSDARG00000114408 217.08 1627.25
61. si:dkeyp-86f7.3 si:dkeyp-86f7.3 217.08 1627.25
62. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 217.08 1627.25 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
63. hmgn2 ENSDARG00000099572 212.56 1593.37 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
64. rpl36a ENSDARG00000058105, ENSDARG00000112656 203.52 1525.61 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
65. zgc:165571 zgc:165571 203.52 1525.61
66. ckma ENSDARG00000035327, ENSDARG00000114671 198.99 1491.65 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
67. fkbp1aa ENSDARG00000022684 198.99 1491.65 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
68. gch2 ENSDARG00000099101 198.99 1491.65 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
69. rps12 ENSDARG00000036875, ENSDARG00000115157 198.99 1491.65 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
70. rps2 ENSDARG00000077291 198.99 1491.65 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
71. rps26l ENSDARG00000030408 198.99 1491.65 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
72. rps27a ENSDARG00000032725, ENSDARG00000114059 198.99 1491.65 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
73. zgc:66286 zgc:66286 198.99 1491.65
74. eif5a ENSDARG00000017235 194.47 1457.77 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
75. FP067396.1 FP067396.1 189.95 1423.88
76. rps20 ENSDARG00000036044 189.95 1423.88 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. s100a10b ENSDARG00000025254 189.95 1423.88 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
78. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 185.43 1390.00 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
79. cfl1 ENSDARG00000021124 185.43 1390.00 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
80. sparc ENSDARG00000019353 185.43 1390.00 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
81. rplp1 ENSDARG00000021864 180.90 1356.04 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 176.38 1322.16 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. rps10 ENSDARG00000034897 176.38 1322.16 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
84. rps3 ENSDARG00000103007 176.38 1322.16 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
85. rps4x ENSDARG00000014690 176.38 1322.16 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. tpma ENSDARG00000033683 176.38 1322.16 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
87. zgc:153129 zgc:153129 176.38 1322.16
88. rps15 ENSDARG00000070849, ENSDARG00000110979 171.86 1288.28 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
89. efemp2a ENSDARG00000094324 167.34 1254.40 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
90. rpl19 ENSDARG00000013307 167.34 1254.40 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
91. bcam ENSDARG00000090190 162.81 1220.44 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
92. hsp90ab1 ENSDARG00000029150 162.81 1220.44 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
93. rpl36 ENSDARG00000100588 162.81 1220.44 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
94. rpl7 ENSDARG00000007320 162.81 1220.44 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
95. smyhc1 ENSDARG00000099959, ENSDARG00000115916 162.81 1220.44 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
96. rplp2 ENSDARG00000101406 158.29 1186.56 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
97. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 153.77 1152.68 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
98. krt18 ENSDARG00000018404, ENSDARG00000109528 153.77 1152.68 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
99. rps27.1 ENSDARG00000023298 153.77 1152.68 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
100. ywhabl ENSDARG00000040287 153.77 1152.68 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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