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Experiment Zebrafish_40hpf_whole_embryo2, section s6.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16576.93 124269.13
2. hmga1a ENSDARG00000028335 1294.50 9704.23 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
3. ptmab ENSDARG00000101766 1280.59 9599.96 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1241.54 9307.22 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. zgc:112425 zgc:112425 1189.71 8918.67
6. mt-co2 ENSDARG00000063908 1114.76 8356.81 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. ppiaa ENSDARG00000009212 829.79 6220.53 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. eef1a1l1 ENSDARG00000020850 800.62 6001.86 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. mt-nd2 ENSDARG00000063899 746.32 5594.80 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. tmsb4x ENSDARG00000077777 744.97 5584.68 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. si:dkey-151g10.6 si:dkey-151g10.6 723.43 5423.20
12. mt-atp6 ENSDARG00000063911 672.04 5037.95 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. actb2 ENSDARG00000037870 664.19 4979.11 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. mt-nd4 ENSDARG00000063917 631.65 4735.17 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. AL954137.2 ENSDARG00000114408 620.66 4652.78
16. mt-co3 ENSDARG00000063912 619.76 4646.04 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 584.31 4380.29 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 557.61 4180.13 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. hmgn2 ENSDARG00000099572 529.56 3969.85 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
20. h3f3a 437.33 3278.45 H3 histone, family 3A, transcript variant X1
21. rpl10a ENSDARG00000042905, ENSDARG00000115649 412.65 3093.44 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
22. rpl8 ENSDARG00000014867 409.51 3069.90 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
23. pabpc1a ENSDARG00000017219 403.68 3026.19 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
24. pcna ENSDARG00000054155 402.78 3019.44 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
25. cirbp cirbp 397.62 2980.76
26. mt-nd1 ENSDARG00000063895 393.58 2950.48 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. actb1 ENSDARG00000037746, ENSDARG00000113649 386.62 2898.30 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
28. hsp90ab1 ENSDARG00000029150 379.67 2846.20 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
29. hnrnpab hnrnpab 366.43 2746.95
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 361.27 2708.26 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. id1 ENSDARG00000040764 352.51 2642.59 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
32. rpl18a ENSDARG00000025073 344.89 2585.47 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
33. rps14 ENSDARG00000036629 340.85 2555.19 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
34. rplp1 ENSDARG00000021864 339.05 2541.69 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
35. rps23 ENSDARG00000021838 338.15 2534.94 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
36. mt-cyb ENSDARG00000063924 318.18 2385.24 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
37. zgc:123194 zgc:123194 318.18 2385.24
38. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 316.84 2375.19 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
39. cfl1 ENSDARG00000021124 311.45 2334.79 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
40. rpl11 ENSDARG00000043509 308.31 2311.25 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
41. rpl26 ENSDARG00000102317 307.41 2304.50 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
42. si:dkeyp-86f7.3 si:dkeyp-86f7.3 307.19 2302.85
43. si:ch1073-429i10.3 305.39 2289.36 si:ch1073-429i10.3, transcript variant X2
44. rps27a ENSDARG00000032725, ENSDARG00000114059 305.17 2287.71 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
45. rps26l ENSDARG00000030408 304.72 2284.34 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
46. rps20 ENSDARG00000036044 300.01 2249.03 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
47. btf3 ENSDARG00000035400, ENSDARG00000116462 297.54 2230.51 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
48. rpl9 ENSDARG00000037350, ENSDARG00000112384 294.85 2210.35 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
49. hnrnpa0a ENSDARG00000089302 293.28 2198.58 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
50. rpl36a ENSDARG00000058105, ENSDARG00000112656 291.26 2183.43 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
51. rpl23 ENSDARG00000053457 283.63 2126.24 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
52. rpsa ENSDARG00000019181 273.53 2050.52 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
53. khdrbs1a ENSDARG00000052856 248.17 1860.41 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
54. rpl19 ENSDARG00000013307 245.71 1841.97 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
55. fkbp1aa ENSDARG00000022684 244.58 1833.50 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
56. rplp0 ENSDARG00000051783 239.42 1794.81 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
57. rps19 ENSDARG00000030602 235.16 1762.88 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
58. ptmaa ENSDARG00000021113, ENSDARG00000110479 227.53 1705.68 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
59. eif5a ENSDARG00000017235 224.39 1682.14 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
60. ran ENSDARG00000057026 223.72 1677.12 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
61. cryba2b ENSDARG00000041925 222.14 1665.27 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324]
62. rpl36 ENSDARG00000100588 221.92 1663.63 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
63. rps6 ENSDARG00000019778 215.41 1614.82 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
64. rps2 ENSDARG00000077291 214.74 1609.80 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
65. rps4x ENSDARG00000014690 212.27 1591.28 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
66. rpl5b ENSDARG00000015862, ENSDARG00000109661 212.05 1589.64 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
67. TUBA1A ENSDARG00000001889 211.37 1584.54 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
68. cryba1b ENSDARG00000053875 209.13 1567.75 crystallin, beta A1b [Source:ZFIN;Acc:ZDB-GENE-040718-326]
69. marcksl1b ENSDARG00000035715 208.46 1562.72 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
70. marcksb ENSDARG00000008803 205.54 1540.83 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
71. rpl27 ENSDARG00000015128 204.42 1532.44 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
72. rps27.1 ENSDARG00000023298 203.07 1522.32 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
73. marcksl1a ENSDARG00000039034 201.95 1513.92 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
74. rps12 ENSDARG00000036875, ENSDARG00000115157 201.95 1513.92 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
75. h3f3d ENSDARG00000045248 201.50 1510.55 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
76. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 201.28 1508.90 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
77. rpl15 ENSDARG00000009285 201.05 1507.17 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
78. rpl6 ENSDARG00000058451 198.36 1487.01 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
79. rps5 ENSDARG00000043453 196.56 1473.51 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
80. top1l ENSDARG00000070545 196.56 1473.51 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
81. rps15 ENSDARG00000070849, ENSDARG00000110979 194.77 1460.10 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
82. rps9 ENSDARG00000011405, ENSDARG00000113248 192.75 1444.95 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
83. mt-co1 ENSDARG00000063905 192.53 1443.30 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
84. rplp2 ENSDARG00000101406 191.63 1436.56 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
85. rps15a ENSDARG00000010160 185.34 1389.40 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
86. faua ENSDARG00000099022 179.51 1345.70 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
87. tubb4b ENSDARG00000002344 169.19 1268.33 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
88. rps3 ENSDARG00000103007 168.96 1266.61 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
89. ccnd1 ENSDARG00000101637 168.74 1264.96 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
90. rps10 ENSDARG00000034897 168.74 1264.96 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
91. celf2 ENSDARG00000002131, ENSDARG00000110267 166.50 1248.17 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
92. rpl18 ENSDARG00000029533 165.60 1241.42 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
93. rpl28 ENSDARG00000005791 164.25 1231.30 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
94. gnb2l1 162.91 1221.26 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
95. rps13 ENSDARG00000036298, ENSDARG00000112818 162.23 1216.16 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
96. seta ENSDARG00000031495 162.01 1214.51 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
97. rplp2l ENSDARG00000011201 161.34 1209.49 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
98. ppiab ENSDARG00000103994 157.97 1184.22 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
99. alyref ENSDARG00000077732 156.85 1175.83 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
100. ddx5 ENSDARG00000038068 156.62 1174.10 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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