Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s5.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15017.71 112565.68
2. ptmab ENSDARG00000101766 1439.72 10791.46 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
3. hmga1a ENSDARG00000028335 1397.71 10476.58 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1389.63 10416.01 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. zgc:112425 zgc:112425 1256.32 9416.78
6. ppiaa ENSDARG00000009212 946.62 7095.42 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
7. eef1a1l1 ENSDARG00000020850 908.92 6812.84 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. mt-co2 ENSDARG00000063908 850.48 6374.80 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. actb2 ENSDARG00000037870 830.28 6223.39 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. hmgn2 ENSDARG00000099572 804.42 6029.55 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
11. AL954137.2 ENSDARG00000114408 786.38 5894.33
12. si:dkey-151g10.6 si:dkey-151g10.6 694.82 5208.04
13. mt-nd2 ENSDARG00000063899 674.89 5058.66 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. tmsb4x ENSDARG00000077777 660.07 4947.57 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mt-co3 ENSDARG00000063912 587.90 4406.62 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. h3f3a 576.59 4321.85 H3 histone, family 3A, transcript variant X1
17. mt-nd4 ENSDARG00000063917 549.66 4119.99 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 518.69 3887.86 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. hspa8 ENSDARG00000068992, ENSDARG00000114726 511.69 3835.39 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
20. mt-atp6 ENSDARG00000063911 482.06 3613.29 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. si:dkeyp-86f7.3 si:dkeyp-86f7.3 435.74 3266.10
22. hnrnpab hnrnpab 433.86 3252.01
23. actb1 ENSDARG00000037746, ENSDARG00000113649 426.58 3197.44 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
24. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 423.35 3173.23 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
25. rpl8 ENSDARG00000014867 416.08 3118.74 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
26. rpl18a ENSDARG00000025073 410.96 3080.36 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
27. id1 ENSDARG00000040764 406.92 3050.08 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
28. cirbp cirbp 405.58 3040.04
29. zgc:123194 zgc:123194 404.23 3029.92
30. pcna ENSDARG00000054155 390.50 2927.00 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 382.42 2866.44 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. rplp1 ENSDARG00000021864 380.26 2850.25 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
33. rpl23 ENSDARG00000053457 364.91 2735.19 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
34. hsp90ab1 ENSDARG00000029150 346.60 2597.95 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
35. rpl21 ENSDARG00000010516, ENSDARG00000110263 340.41 2551.55 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 339.06 2541.43 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. rpl26 ENSDARG00000102317 335.29 2513.18 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
38. si:ch1073-429i10.3 335.29 2513.18 si:ch1073-429i10.3, transcript variant X2
39. btf3 ENSDARG00000035400, ENSDARG00000116462 333.67 2501.03 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
40. pabpc1a ENSDARG00000017219 328.83 2464.75 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
41. hnrnpa0a ENSDARG00000089302 321.02 2406.21 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
42. mt-nd1 ENSDARG00000063895 316.98 2375.93 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
43. rps23 ENSDARG00000021838 315.90 2367.84 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
44. khdrbs1a ENSDARG00000052856 314.01 2353.67 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
45. rpsa ENSDARG00000019181 311.86 2337.56 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
46. ptmaa ENSDARG00000021113, ENSDARG00000110479 306.74 2299.18 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
47. cfl1 ENSDARG00000021124 305.13 2287.11 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
48. rpl11 ENSDARG00000043509 304.32 2281.04 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
49. fkbp1aa ENSDARG00000022684 288.70 2163.96 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
50. mt-cyb ENSDARG00000063924 280.89 2105.42 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
51. rpl36a ENSDARG00000058105, ENSDARG00000112656 276.58 2073.11 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
52. marcksb ENSDARG00000008803 273.08 2046.88 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
53. marcksl1b ENSDARG00000035715 260.69 1954.01 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
54. rps27a ENSDARG00000032725, ENSDARG00000114059 259.34 1943.89 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
55. rpl19 ENSDARG00000013307 256.92 1925.75 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
56. ran ENSDARG00000057026 254.23 1905.59 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
57. eif5a ENSDARG00000017235 244.80 1834.91 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
58. rps2 ENSDARG00000077291 243.19 1822.84 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
59. rps14 ENSDARG00000036629 239.95 1798.55 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
60. rps19 ENSDARG00000030602 239.15 1792.56 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
61. rplp0 ENSDARG00000051783 230.80 1729.97 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
62. rps4x ENSDARG00000014690 226.22 1695.64 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
63. rpl15 ENSDARG00000009285 225.68 1691.59 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
64. rps6 ENSDARG00000019778 224.60 1683.50 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
65. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 223.80 1677.50 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
66. TUBA1A ENSDARG00000001889 221.91 1663.33 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
67. rps26l ENSDARG00000030408 218.14 1635.07 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
68. rps20 ENSDARG00000036044 215.45 1614.91 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
69. rpl5b ENSDARG00000015862, ENSDARG00000109661 214.10 1604.79 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
70. rps27.1 ENSDARG00000023298 212.21 1590.63 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
71. rpl27 ENSDARG00000015128 210.60 1578.56 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
72. top1l ENSDARG00000070545 206.56 1548.28 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
73. rps15 ENSDARG00000070849, ENSDARG00000110979 202.79 1520.02 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
74. hmgb1a ENSDARG00000099175, ENSDARG00000114353 201.17 1507.88 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
75. rpl36 ENSDARG00000100588 200.63 1503.83 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
76. rps12 ENSDARG00000036875, ENSDARG00000115157 200.10 1499.86 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
77. ubc ENSDARG00000102632 199.02 1491.76 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
78. alyref ENSDARG00000077732 196.33 1471.60 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
79. rps15a ENSDARG00000010160 196.33 1471.60 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
80. h3f3d ENSDARG00000045248 194.98 1461.48 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
81. h2afvb ENSDARG00000116491 194.44 1457.43 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
82. rps9 ENSDARG00000011405, ENSDARG00000113248 191.75 1437.27 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
83. tubb4b ENSDARG00000002344 190.67 1429.17 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
84. rpl18 ENSDARG00000029533 187.98 1409.01 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. marcksl1a ENSDARG00000039034 186.36 1396.87 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
86. ddx5 ENSDARG00000038068 184.48 1382.78 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
87. ppiab ENSDARG00000103994 183.94 1378.73 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
88. faua ENSDARG00000099022 182.59 1368.61 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
89. seta ENSDARG00000031495 182.32 1366.58 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
90. mt-co1 ENSDARG00000063905 180.44 1352.49 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
91. tuba8l4 ENSDARG00000006260 179.90 1348.45 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
92. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 179.09 1342.37 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
93. tuba8l ENSDARG00000042708 175.05 1312.09 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
94. ccnd1 ENSDARG00000101637 172.36 1291.93 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
95. rps3 ENSDARG00000103007 168.59 1263.67 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
96. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 167.78 1257.60 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
97. rps5 ENSDARG00000043453 166.70 1249.50 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
98. rpl6 ENSDARG00000058451 165.09 1237.44 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
99. rps10 ENSDARG00000034897 164.55 1233.39 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
100. rbm4.3 ENSDARG00000022129 163.74 1227.32 RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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