Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s4.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14040.26 105241.29
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2244.50 16824.05 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. ptmab ENSDARG00000101766 1390.49 10422.67 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
4. zgc:112425 zgc:112425 1219.76 9142.93
5. hmga1a ENSDARG00000028335 1160.15 8696.11 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
6. tmsb4x ENSDARG00000077777 927.97 6955.77 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. ppiaa ENSDARG00000009212 863.58 6473.12 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. actb2 ENSDARG00000037870 848.86 6362.78 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. eef1a1l1 ENSDARG00000020850 785.21 5885.68 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
10. mt-co2 ENSDARG00000063908 744.00 5576.79 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. AL954137.2 ENSDARG00000114408 735.17 5510.60
12. hmgn2 ENSDARG00000099572 692.48 5190.61 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
13. mt-nd4 ENSDARG00000063917 624.04 4677.60 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. mt-nd2 ENSDARG00000063899 609.69 4570.04 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. mt-co3 ENSDARG00000063912 545.67 4090.17 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. eef2b ENSDARG00000100371, ENSDARG00000109247 525.43 3938.46 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
17. si:dkey-151g10.6 si:dkey-151g10.6 523.96 3927.44
18. hspa8 ENSDARG00000068992, ENSDARG00000114726 512.19 3839.21 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
19. actb1 ENSDARG00000037746, ENSDARG00000113649 497.84 3731.65 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
20. mt-atp6 ENSDARG00000063911 497.84 3731.65 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. h3f3a 444.12 3328.98 H3 histone, family 3A, transcript variant X1
22. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 426.09 3193.83 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
23. pabpc1a ENSDARG00000017219 401.80 3011.76 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
24. si:dkeyp-86f7.3 si:dkeyp-86f7.3 398.12 2984.18
25. hnrnpab hnrnpab 394.08 2953.90
26. cirbp cirbp 390.40 2926.31
27. rplp1 ENSDARG00000021864 385.98 2893.18 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
28. zgc:123194 zgc:123194 376.05 2818.75
29. id1 ENSDARG00000040764 358.02 2683.60 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
30. hsp90ab1 ENSDARG00000029150 355.07 2661.49 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
31. hnrnpa0a ENSDARG00000089302 345.87 2592.53 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
32. rpl8 ENSDARG00000014867 344.40 2581.51 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
33. rpsa ENSDARG00000019181 332.26 2490.51 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
34. rpl10a ENSDARG00000042905, ENSDARG00000115649 323.80 2427.10 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
35. ptmaa ENSDARG00000021113, ENSDARG00000110479 316.81 2374.71 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
36. cfl1 ENSDARG00000021124 311.65 2336.03 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
37. rpl26 ENSDARG00000102317 310.55 2327.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
38. rpl23 ENSDARG00000053457 305.40 2289.18 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. btf3 ENSDARG00000035400, ENSDARG00000116462 302.46 2267.14 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
40. rpl18a ENSDARG00000025073 300.25 2250.58 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
41. khdrbs1a ENSDARG00000052856 295.46 2214.67 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
42. pcna ENSDARG00000054155 294.73 2209.20 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
43. si:ch1073-429i10.3 293.62 2200.88 si:ch1073-429i10.3, transcript variant X2
44. marcksb ENSDARG00000008803 292.15 2189.86 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
45. rpl9 ENSDARG00000037350, ENSDARG00000112384 292.15 2189.86 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
46. mt-nd1 ENSDARG00000063895 281.48 2109.88 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
47. rps23 ENSDARG00000021838 278.91 2090.62 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
48. mt-cyb ENSDARG00000063924 273.76 2052.02 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
49. rpl11 ENSDARG00000043509 266.76 1999.55 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
50. fkbp1aa ENSDARG00000022684 265.29 1988.53 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
51. rpl21 ENSDARG00000010516, ENSDARG00000110263 261.61 1960.94 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
52. rpl36a ENSDARG00000058105, ENSDARG00000112656 256.83 1925.12 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
53. rps27a ENSDARG00000032725, ENSDARG00000114059 254.99 1911.32 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
54. eif5a ENSDARG00000017235 246.16 1845.14 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
55. rps26l ENSDARG00000030408 235.12 1762.38 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 231.81 1737.57 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
57. TUBA1A ENSDARG00000001889 230.71 1729.33 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
58. rps14 ENSDARG00000036629 222.61 1668.61 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
59. ran ENSDARG00000057026 221.14 1657.59 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
60. zgc:92533 zgc:92533 220.40 1652.05
61. marcksl1b ENSDARG00000035715 218.56 1638.26 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
62. top1l ENSDARG00000070545 214.88 1610.67 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
63. rps27.1 ENSDARG00000023298 213.04 1596.88 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
64. ppiab ENSDARG00000103994 211.20 1583.09 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
65. stmn1b ENSDARG00000033655 205.68 1541.71 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
66. rplp0 ENSDARG00000051783 203.48 1525.22 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
67. rpl19 ENSDARG00000013307 197.22 1478.30 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
68. zgc:158463 ENSDARG00000089382 197.22 1478.30 zgc:158463 [Source:ZFIN;Acc:ZDB-GENE-070410-9]
69. hmgb1a ENSDARG00000099175, ENSDARG00000114353 196.85 1475.52 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
70. rpl15 ENSDARG00000009285 196.49 1472.83 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
71. rps20 ENSDARG00000036044 196.49 1472.83 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. rps2 ENSDARG00000077291 194.28 1456.26 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
73. marcksl1a ENSDARG00000039034 193.91 1453.49 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
74. alyref ENSDARG00000077732 193.17 1447.94 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
75. rpl27 ENSDARG00000015128 192.44 1442.47 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
76. rpl5b ENSDARG00000015862, ENSDARG00000109661 188.76 1414.88 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
77. h3f3d ENSDARG00000045248 187.29 1403.87 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
78. rps6 ENSDARG00000019778 187.29 1403.87 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
79. rps3 ENSDARG00000103007 183.24 1373.51 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
80. h2afvb ENSDARG00000116491 181.03 1356.94 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
81. col1a1a ENSDARG00000012405, ENSDARG00000116113 179.93 1348.70 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
82. rps15 ENSDARG00000070849, ENSDARG00000110979 178.46 1337.68 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
83. rps19 ENSDARG00000030602 178.46 1337.68 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
84. rps12 ENSDARG00000036875, ENSDARG00000115157 174.78 1310.09 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
85. pbx4 ENSDARG00000052150 172.94 1296.30 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
86. rps4x ENSDARG00000014690 171.47 1285.28 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
87. rps9 ENSDARG00000011405, ENSDARG00000113248 170.73 1279.74 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
88. tubb4b ENSDARG00000002344 169.99 1274.19 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
89. rpl36 ENSDARG00000100588 167.42 1254.93 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
90. ddx5 ENSDARG00000038068 165.58 1241.13 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
91. faua ENSDARG00000099022 159.32 1194.21 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
92. rps15a ENSDARG00000010160 159.32 1194.21 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
93. rps5 ENSDARG00000043453 158.59 1188.74 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
94. celf2 ENSDARG00000002131, ENSDARG00000110267 157.48 1180.42 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
95. tuba8l4 ENSDARG00000006260 157.48 1180.42 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
96. fabp3 ENSDARG00000023290 156.01 1169.40 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
97. rplp2 ENSDARG00000101406 155.64 1166.63 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
98. seta ENSDARG00000031495 155.64 1166.63 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
99. hnrnpm ENSDARG00000061735 153.80 1152.84 heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
100. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 153.44 1150.14 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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