Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s38.

Sample reads: 133,423. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12311.32 92272.72
2. tpma ENSDARG00000033683 4112.92 30826.13 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 4010.01 30054.82 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mylz3 ENSDARG00000017441 2502.40 18755.36 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2454.37 18395.38 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2245.13 16827.13 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. ckmb ENSDARG00000040565 2179.95 16338.61 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. atp2a1 ENSDARG00000020574 1807.76 13549.07 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. mt-nd2 ENSDARG00000063899 1689.42 12662.12 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. mt-co2 ENSDARG00000063908 1634.53 12250.72 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. mt-nd4 ENSDARG00000063917 1552.21 11633.73 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. tmsb4x ENSDARG00000077777 1490.46 11170.92 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. actc1b ENSDARG00000099197 1457.87 10926.66 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. mt-atp6 ENSDARG00000063911 1402.99 10515.34 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. mt-co3 ENSDARG00000063912 1204.03 9024.14 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1149.15 8612.82 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
17. acta1b ENSDARG00000055618 1107.98 8304.25 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
18. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1078.83 8085.78 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
19. pvalb1 ENSDARG00000037789 1046.24 7841.52 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
20. actb2 ENSDARG00000037870 934.75 7005.90 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. mt-cyb ENSDARG00000063924 800.97 6003.23 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. mt-nd1 ENSDARG00000063895 759.81 5694.74 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
23. myhz1.3 ENSDARG00000067997 754.66 5656.14 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
24. apoc1l apoc1l 737.51 5527.60
25. tnnt3a ENSDARG00000030270 711.79 5334.83 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. apoa1b ENSDARG00000101324 686.06 5141.98 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. tnni2a.4 ENSDARG00000029069 668.91 5013.45 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
28. eef1a1l1 ENSDARG00000020850 627.74 4704.88 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. tnnt3b ENSDARG00000068457 610.59 4576.34 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
30. acta1a ENSDARG00000036371 600.30 4499.22 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. si:dkey-151g10.6 si:dkey-151g10.6 548.85 4113.60
32. apobb apobb 505.97 3792.22
33. ttna ttna 505.97 3792.22
34. ppiaa ENSDARG00000009212 487.10 3650.79 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
35. apoa2 ENSDARG00000015866 464.80 3483.65 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
36. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 463.09 3470.84 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
37. myl1 ENSDARG00000014196 408.20 3059.44 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
38. col1a1a ENSDARG00000012405, ENSDARG00000116113 397.91 2982.32 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 389.34 2918.08 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. si:ch211-226o13.2 360.18 2699.53 si:ch211-226o13.2
41. ttnb ttnb 353.32 2648.12
42. mt-co1 ENSDARG00000063905 337.88 2532.39 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
43. eef2b ENSDARG00000100371, ENSDARG00000109247 325.88 2442.45 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
44. apoeb ENSDARG00000040295 319.02 2391.04 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
45. mylpfb ENSDARG00000002589 315.59 2365.33 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
46. rpl18a ENSDARG00000025073 315.59 2365.33 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
47. hmga1a ENSDARG00000028335 310.44 2326.73 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
48. btf3 ENSDARG00000035400, ENSDARG00000116462 308.73 2313.92 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. hspa8 ENSDARG00000068992, ENSDARG00000114726 296.72 2223.90 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
50. rpl10a ENSDARG00000042905, ENSDARG00000115649 288.14 2159.59 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
51. aldoab ENSDARG00000034470 283.00 2121.07 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
52. zgc:112425 zgc:112425 283.00 2121.07
53. zgc:161979_1 zgc:161979_1 283.00 2121.07
54. col1a1b ENSDARG00000035809 269.28 2018.24 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
55. ptmab ENSDARG00000101766 260.70 1953.93 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
56. mt-nd3 ENSDARG00000063914 250.41 1876.81 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
57. rpl8 ENSDARG00000014867 246.98 1851.10 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
58. rpl23 ENSDARG00000053457 243.55 1825.39 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
59. rps27a ENSDARG00000032725, ENSDARG00000114059 243.55 1825.39 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
60. rps23 ENSDARG00000021838 240.12 1799.69 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
61. gapdh ENSDARG00000043457 238.41 1786.87 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
62. zgc:66286 zgc:66286 233.26 1748.27
63. cyt1l ENSDARG00000036832 231.54 1735.38 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
64. nme2b.2 ENSDARG00000099420 231.54 1735.38 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
65. zgc:92533 zgc:92533 222.97 1671.15
66. rpl11 ENSDARG00000043509 216.11 1619.73 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
67. rpl26 ENSDARG00000102317 216.11 1619.73 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
68. cfl1l ENSDARG00000012972 212.68 1594.03 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
69. rps14 ENSDARG00000036629 212.68 1594.03 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
70. rps26l ENSDARG00000030408 210.96 1581.13 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
71. tpm3 ENSDARG00000005162 209.25 1568.32 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
72. rps20 ENSDARG00000036044 204.10 1529.72 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
73. pkmb ENSDARG00000099860 200.67 1504.01 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
74. bhmt ENSDARG00000013430 198.96 1491.20 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
75. eif5a ENSDARG00000017235 197.24 1478.30 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
76. col2a1a ENSDARG00000069093, ENSDARG00000111202 195.53 1465.49 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
77. rpl21 ENSDARG00000010516, ENSDARG00000110263 193.81 1452.60 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
78. myhz2 ENSDARG00000012944 192.10 1439.78 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
79. tmem38a ENSDARG00000024047 186.95 1401.18 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
80. rpsa ENSDARG00000019181 183.52 1375.47 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
81. apoa1a ENSDARG00000012076, ENSDARG00000110395 181.81 1362.66 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
82. myl10 ENSDARG00000062592 181.81 1362.66 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
83. ATP5B 180.09 1349.77 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
84. col11a1a ENSDARG00000026165, ENSDARG00000115341 180.09 1349.77 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
85. pabpc1a ENSDARG00000017219 180.09 1349.77 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
86. zgc:161979 zgc:161979 180.09 1349.77
87. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 178.38 1336.95 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
88. rpl9 ENSDARG00000037350, ENSDARG00000112384 176.66 1324.06 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
89. rps3 ENSDARG00000103007 174.94 1311.17 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
90. rplp1 ENSDARG00000021864 173.23 1298.35 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
91. hbae3 ENSDARG00000079305 168.08 1259.75 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
92. pvalb4 ENSDARG00000024433 168.08 1259.75 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 164.65 1234.04 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. zgc:153129 zgc:153129 164.65 1234.04
95. apoa4 apoa4 161.22 1208.34
96. rpl36a ENSDARG00000058105, ENSDARG00000112656 159.51 1195.52 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
97. rps27.1 ENSDARG00000023298 159.51 1195.52 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. krt8 ENSDARG00000058358, ENSDARG00000109279 157.79 1182.63 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. atp5g3b 156.08 1169.81 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
100. rps4x ENSDARG00000014690 154.36 1156.92 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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