Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s36.

Sample reads: 133,422. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15105.19 113213.65
2. tpma ENSDARG00000033683 4115.65 30846.87 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3432.84 25729.19 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckma ENSDARG00000035327, ENSDARG00000114671 3332.94 24980.44 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2706.55 20285.64 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckmb ENSDARG00000040565 2417.44 18118.75 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mylz3 ENSDARG00000017441 2402.16 18004.23 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. atp2a1 ENSDARG00000020574 1943.83 14569.04 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. actc1b ENSDARG00000099197 1939.12 14533.74 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. acta1b ENSDARG00000055618 1332.71 9988.68 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1305.68 9786.09 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. mt-nd2 ENSDARG00000063899 1248.09 9354.46 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1228.11 9204.71 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. mt-nd4 ENSDARG00000063917 1151.72 8632.16 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. mt-atp6 ENSDARG00000063911 1124.69 8429.57 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. mt-co2 ENSDARG00000063908 1096.49 8218.21 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. tmsb4x ENSDARG00000077777 1029.50 7716.12 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
18. pvalb1 ENSDARG00000037789 1025.97 7689.66 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
19. actb2 ENSDARG00000037870 906.10 6791.23 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
20. myhz1.3 ENSDARG00000067997 882.60 6615.10 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
21. mt-co3 ENSDARG00000063912 853.21 6394.82 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. tnnt3a ENSDARG00000030270 833.24 6245.15 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. apoc1l apoc1l 823.83 6174.62
24. apoa1b ENSDARG00000101324 725.12 5434.79 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
25. mylpfb ENSDARG00000002589 607.59 4553.90 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
26. apoa2 ENSDARG00000015866 594.66 4456.99 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
27. tnni2a.4 ENSDARG00000029069 589.96 4421.76 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
28. mt-nd1 ENSDARG00000063895 582.91 4368.92 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. eef1a1l1 ENSDARG00000020850 571.16 4280.85 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. acta1a ENSDARG00000036371 567.63 4254.40 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. tnnt3b ENSDARG00000068457 565.28 4236.78 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
32. apobb apobb 555.88 4166.33
33. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 528.85 3963.74 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
34. ttna ttna 494.77 3708.31
35. mt-cyb ENSDARG00000063924 492.42 3690.70 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
36. myl1 ENSDARG00000014196 475.97 3567.40 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
37. apoeb ENSDARG00000040295 441.89 3311.97 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
38. ttnb ttnb 434.83 3259.06
39. si:ch211-226o13.2 399.58 2994.86 si:ch211-226o13.2
40. si:dkey-151g10.6 si:dkey-151g10.6 364.32 2730.58
41. actb1 ENSDARG00000037746, ENSDARG00000113649 343.17 2572.06 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. col1a1a ENSDARG00000012405, ENSDARG00000116113 338.47 2536.84 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 336.11 2519.15 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. ppiaa ENSDARG00000009212 331.41 2483.92 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
45. hspa8 ENSDARG00000068992, ENSDARG00000114726 309.08 2316.56 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
46. rpl10a ENSDARG00000042905, ENSDARG00000115649 306.73 2298.95 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
47. gapdh ENSDARG00000043457 292.63 2193.27 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
48. nme2b.2 ENSDARG00000099420 291.46 2184.50 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
49. eef2b ENSDARG00000100371, ENSDARG00000109247 280.88 2105.20 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
50. zgc:66286 zgc:66286 279.70 2096.36
51. rpl18a ENSDARG00000025073 276.18 2069.97 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. rpl23 ENSDARG00000053457 276.18 2069.97 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
53. aldoab ENSDARG00000034470 275.00 2061.13 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
54. pkmb ENSDARG00000099860 267.95 2008.29 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
55. apoa1a ENSDARG00000012076, ENSDARG00000110395 265.60 1990.68 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
56. hmga1a ENSDARG00000028335 244.45 1832.16 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
57. col1a1b ENSDARG00000035809 242.10 1814.54 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
58. rpl8 ENSDARG00000014867 240.92 1805.70 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
59. zgc:92533 zgc:92533 239.75 1796.93
60. ATP5B 238.57 1788.09 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
61. zgc:112425 zgc:112425 236.22 1770.47
62. rpl26 ENSDARG00000102317 233.87 1752.86 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
63. rpl21 ENSDARG00000010516, ENSDARG00000110263 227.99 1708.79 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
64. ptmab ENSDARG00000101766 226.82 1700.02 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
65. rps27a ENSDARG00000032725, ENSDARG00000114059 225.64 1691.18 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
66. AC024175.17 AC024175.17 219.77 1647.18
67. bhmt ENSDARG00000013430 218.59 1638.34 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
68. mt-co1 ENSDARG00000063905 217.42 1629.57 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
69. rpl9 ENSDARG00000037350, ENSDARG00000112384 217.42 1629.57 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
70. zgc:161979_1 zgc:161979_1 213.89 1603.11
71. cyt1l ENSDARG00000036832 210.37 1576.73 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
72. rps26l ENSDARG00000030408 206.84 1550.27 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
73. rps14 ENSDARG00000036629 202.14 1515.04 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
74. myl10 ENSDARG00000062592 200.96 1506.20 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
75. atp5g3b 197.44 1479.82 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
76. rpl11 ENSDARG00000043509 196.26 1470.97 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
77. pabpc1a ENSDARG00000017219 191.56 1435.75 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
78. rplp0 ENSDARG00000051783 191.56 1435.75 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
79. cfl1l ENSDARG00000012972 190.39 1426.98 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
80. rps23 ENSDARG00000021838 190.39 1426.98 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
81. rplp1 ENSDARG00000021864 188.04 1409.36 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
82. rps2 ENSDARG00000077291 183.34 1374.14 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
83. hbae3 ENSDARG00000079305 182.16 1365.29 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
84. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 182.16 1365.29 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
85. eif5a ENSDARG00000017235 180.98 1356.45 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
86. tmem38a ENSDARG00000024047 179.81 1347.68 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
87. rpl36a ENSDARG00000058105, ENSDARG00000112656 175.11 1312.45 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
88. rpl19 ENSDARG00000013307 171.58 1286.00 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
89. rps20 ENSDARG00000036044 170.41 1277.23 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
90. tpm3 ENSDARG00000005162 170.41 1277.23 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
91. fkbp1aa ENSDARG00000022684 166.88 1250.77 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
92. pvalb4 ENSDARG00000024433 166.88 1250.77 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
93. rpl36 ENSDARG00000100588 159.83 1197.93 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
94. rpl5b ENSDARG00000015862, ENSDARG00000109661 157.48 1180.32 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
95. rps3 ENSDARG00000103007 157.48 1180.32 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
96. rps12 ENSDARG00000036875, ENSDARG00000115157 155.13 1162.70 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
97. rps6 ENSDARG00000019778 153.95 1153.86 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
98. fabp3 ENSDARG00000023290 152.78 1145.09 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
99. smyhc1 ENSDARG00000099959, ENSDARG00000115916 152.78 1145.09 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
100. atp5a1 150.43 1127.48 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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