Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo2, section s35.

Sample reads: 133,425. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9745.94 73044.46
2. tpma ENSDARG00000033683 4265.92 31972.47 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckma ENSDARG00000035327, ENSDARG00000114671 3828.54 28694.37 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 3643.55 27307.90 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. ckmb ENSDARG00000040565 2837.41 21265.99 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2526.23 18933.74 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mylz3 ENSDARG00000017441 2342.46 17556.41 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. atp2a1 ENSDARG00000020574 1940.61 14544.60 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. actc1b ENSDARG00000099197 1819.32 13635.55 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. acta1b ENSDARG00000055618 1419.93 10642.18 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1416.25 10614.60 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mt-nd2 ENSDARG00000063899 1285.17 9632.17 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-atp6 ENSDARG00000063911 1223.91 9173.03 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. mt-co2 ENSDARG00000063908 1166.33 8741.48 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1145.50 8585.36 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. mt-nd4 ENSDARG00000063917 1018.09 7630.44 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. myhz1.3 ENSDARG00000067997 1005.83 7538.56 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
18. mt-co3 ENSDARG00000063912 987.46 7400.87 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. pvalb1 ENSDARG00000037789 981.33 7354.93 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
20. tmsb4x ENSDARG00000077777 878.42 6583.64 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
21. apoc1l apoc1l 850.24 6372.43
22. actb2 ENSDARG00000037870 837.99 6280.62 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. tnni2a.4 ENSDARG00000029069 775.51 5812.34 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. tnnt3a ENSDARG00000030270 753.46 5647.08 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
25. eef1a1l1 ENSDARG00000020850 713.03 5344.06 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. acta1a ENSDARG00000036371 694.65 5206.30 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. apoa1b ENSDARG00000101324 666.47 4995.10 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
28. tnnt3b ENSDARG00000068457 606.44 4545.18 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. mt-nd1 ENSDARG00000063895 595.42 4462.59 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. mt-cyb ENSDARG00000063924 528.03 3957.51 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. apobb apobb 519.46 3893.28
32. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 508.43 3810.61 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
33. ttna ttna 498.63 3737.16
34. myl1 ENSDARG00000014196 496.18 3718.80 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
35. si:ch211-226o13.2 491.28 3682.07 si:ch211-226o13.2
36. si:dkey-151g10.6 si:dkey-151g10.6 465.55 3489.23
37. apoa2 ENSDARG00000015866 464.33 3480.09 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
38. apoeb ENSDARG00000040295 415.32 3112.77 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
39. mylpfb ENSDARG00000002589 414.10 3103.62 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
40. actb1 ENSDARG00000037746, ENSDARG00000113649 405.52 3039.32 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. col1a1a ENSDARG00000012405, ENSDARG00000116113 357.74 2681.21 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 347.94 2607.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. ttnb ttnb 340.59 2552.67
44. zgc:66286 zgc:66286 340.59 2552.67
45. gapdh ENSDARG00000043457 333.24 2497.59 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
46. ppiaa ENSDARG00000009212 330.79 2479.22 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
47. hspa8 ENSDARG00000068992, ENSDARG00000114726 328.34 2460.86 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
48. rpl18a ENSDARG00000025073 317.31 2378.19 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
49. rpl8 ENSDARG00000014867 317.31 2378.19 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
50. rpl23 ENSDARG00000053457 301.38 2258.80 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
51. ATP5B 297.71 2231.29 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
52. rpl10a ENSDARG00000042905, ENSDARG00000115649 295.26 2212.93 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
53. zgc:112425 zgc:112425 292.81 2194.57
54. hmga1a ENSDARG00000028335 289.13 2166.99 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
55. rpl9 ENSDARG00000037350, ENSDARG00000112384 283.01 2121.12 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
56. col1a1b ENSDARG00000035809 264.63 1983.36 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
57. pkmb ENSDARG00000099860 262.18 1965.00 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
58. myl10 ENSDARG00000062592 258.50 1937.42 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
59. fabp3 ENSDARG00000023290 252.38 1891.55 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
60. aldoab ENSDARG00000034470 251.15 1882.33 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
61. eef2b ENSDARG00000100371, ENSDARG00000109247 249.93 1873.19 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
62. nme2b.2 ENSDARG00000099420 248.70 1863.97 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
63. zgc:92533 zgc:92533 248.70 1863.97
64. tpm3 ENSDARG00000005162 234.00 1753.80 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
65. mt-co1 ENSDARG00000063905 230.33 1726.29 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
66. col2a1a ENSDARG00000069093, ENSDARG00000111202 225.42 1689.49 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
67. hbae3 ENSDARG00000079305 225.42 1689.49 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
68. zgc:161979_1 zgc:161979_1 225.42 1689.49
69. rpl21 ENSDARG00000010516, ENSDARG00000110263 224.20 1680.35 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
70. apoa1a ENSDARG00000012076, ENSDARG00000110395 219.30 1643.62 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
71. rps23 ENSDARG00000021838 214.40 1606.90 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
72. ptmab ENSDARG00000101766 207.05 1551.81 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
73. rpl11 ENSDARG00000043509 207.05 1551.81 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
74. tmem38a ENSDARG00000024047 203.37 1524.23 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
75. rpl5b ENSDARG00000015862, ENSDARG00000109661 197.25 1478.36 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
76. rps14 ENSDARG00000036629 196.02 1469.14 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
77. gch2 ENSDARG00000099101 194.80 1460.00 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
78. rps15 ENSDARG00000070849, ENSDARG00000110979 194.80 1460.00 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
79. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 194.80 1460.00 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
80. eif5a ENSDARG00000017235 193.57 1450.78 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
81. rpl26 ENSDARG00000102317 193.57 1450.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
82. rpsa ENSDARG00000019181 187.45 1404.91 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
83. pvalb4 ENSDARG00000024433 186.22 1395.69 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
84. rps3 ENSDARG00000103007 186.22 1395.69 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
85. rps2 ENSDARG00000077291 183.77 1377.33 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
86. rps27a ENSDARG00000032725, ENSDARG00000114059 183.77 1377.33 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
87. rplp1 ENSDARG00000021864 182.54 1368.11 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
88. rpl36a ENSDARG00000058105, ENSDARG00000112656 178.87 1340.61 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
89. rplp0 ENSDARG00000051783 177.64 1331.39 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
90. atp5g3b 173.97 1303.88 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
91. cfl1l ENSDARG00000012972 172.74 1294.66 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
92. rps20 ENSDARG00000036044 171.52 1285.52 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
93. ldb3b ENSDARG00000099974 170.29 1276.30 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
94. rpl19 ENSDARG00000013307 170.29 1276.30 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
95. bhmt ENSDARG00000013430 169.07 1267.16 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
96. rpl36 ENSDARG00000100588 169.07 1267.16 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
97. krt8 ENSDARG00000058358, ENSDARG00000109279 166.62 1248.79 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
98. rpl15 ENSDARG00000009285 166.62 1248.79 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
99. smyhc1 ENSDARG00000099959, ENSDARG00000115916 165.39 1239.57 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
100. cyt1l ENSDARG00000036832 162.94 1221.21 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA