Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s31.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14833.15 111197.81
2. ckma ENSDARG00000035327, ENSDARG00000114671 4213.53 31587.04 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
3. tpma ENSDARG00000033683 3925.65 29428.93 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 3410.96 25570.52 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3095.45 23205.27 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckmb ENSDARG00000040565 2705.79 20284.16 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mylz3 ENSDARG00000017441 2692.71 20186.10 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. actc1b ENSDARG00000099197 2010.81 15074.19 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. atp2a1 ENSDARG00000020574 2004.99 15030.56 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. acta1b ENSDARG00000055618 1286.74 9646.14 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1259.12 9439.09 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1230.04 9221.09 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. mt-atp6 ENSDARG00000063911 1134.08 8501.72 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. mt-co2 ENSDARG00000063908 1106.45 8294.58 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. mt-nd2 ENSDARG00000063899 1033.76 7749.66 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. pvalb1 ENSDARG00000037789 915.99 6866.79 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
17. mt-co3 ENSDARG00000063912 905.81 6790.47 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. actb2 ENSDARG00000037870 873.82 6550.66 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. tmsb4x ENSDARG00000077777 838.93 6289.10 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
20. mt-nd4 ENSDARG00000063917 834.56 6256.34 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
21. apoc1l apoc1l 786.58 5896.66
22. tnnt3a ENSDARG00000030270 747.33 5602.41 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. apoa1b ENSDARG00000101324 741.51 5558.78 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
24. tnnt3b ENSDARG00000068457 651.37 4883.04 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
25. apoa2 ENSDARG00000015866 638.28 4784.91 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. eef1a1l1 ENSDARG00000020850 612.11 4588.73 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. myhz1.3 ENSDARG00000067997 606.30 4545.17 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
28. acta1a ENSDARG00000036371 581.58 4359.86 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 564.13 4229.04 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
30. apobb apobb 540.87 4054.67
31. tnni2a.4 ENSDARG00000029069 532.14 3989.23 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
32. mt-nd1 ENSDARG00000063895 524.87 3934.73 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. actb1 ENSDARG00000037746, ENSDARG00000113649 492.89 3694.99 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. ttna ttna 492.89 3694.99
35. si:dkey-151g10.6 si:dkey-151g10.6 491.43 3684.04
36. mt-cyb ENSDARG00000063924 462.35 3466.04 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
37. mylpfb ENSDARG00000002589 462.35 3466.04 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
38. si:ch211-226o13.2 426.01 3193.62 si:ch211-226o13.2
39. myl1 ENSDARG00000014196 417.28 3128.17 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
40. col1a1a ENSDARG00000012405, ENSDARG00000116113 404.20 3030.12 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
41. rpl18a ENSDARG00000025073 343.13 2572.30 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
42. ttnb ttnb 335.86 2517.80
43. apoeb ENSDARG00000040295 332.95 2495.98 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 316.96 2376.11 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. hspa8 ENSDARG00000068992, ENSDARG00000114726 308.24 2310.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
46. hmga1a ENSDARG00000028335 303.87 2277.98 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
47. myhz1.2 ENSDARG00000067995 302.42 2267.11 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
48. ppiaa ENSDARG00000009212 298.06 2234.43 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
49. zgc:66286 zgc:66286 293.70 2201.74
50. rpl8 ENSDARG00000014867 279.16 2092.74 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
51. zgc:112425 zgc:112425 279.16 2092.74
52. apoa1a ENSDARG00000012076, ENSDARG00000110395 277.70 2081.80 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
53. col1a1b ENSDARG00000035809 267.53 2005.56 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
54. rpl23 ENSDARG00000053457 264.62 1983.74 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
55. fabp3 ENSDARG00000023290 258.80 1940.11 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
56. ptmab ENSDARG00000101766 255.89 1918.30 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
57. gapdh ENSDARG00000043457 251.53 1885.61 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
58. eef2b ENSDARG00000100371, ENSDARG00000109247 250.08 1874.74 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
59. rpl10a ENSDARG00000042905, ENSDARG00000115649 247.17 1852.93 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
60. rpl11 ENSDARG00000043509 238.45 1787.56 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
61. aldoab ENSDARG00000034470 229.72 1722.11 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
62. pkmb ENSDARG00000099860 223.91 1678.56 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
63. mt-co1 ENSDARG00000063905 213.73 1602.24 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
64. ATP5B 212.28 1591.37 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. nme2b.2 ENSDARG00000099420 207.91 1558.61 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
66. pabpc1a ENSDARG00000017219 205.01 1536.87 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
67. rpl9 ENSDARG00000037350, ENSDARG00000112384 205.01 1536.87 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
68. rpl19 ENSDARG00000013307 202.10 1515.06 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
69. myl10 ENSDARG00000062592 196.28 1471.43 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
70. rpl26 ENSDARG00000102317 196.28 1471.43 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
71. col2a1a ENSDARG00000069093, ENSDARG00000111202 194.83 1460.56 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
72. tpm3 ENSDARG00000005162 193.37 1449.61 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
73. rpl21 ENSDARG00000010516, ENSDARG00000110263 187.56 1406.06 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
74. rpl36a ENSDARG00000058105, ENSDARG00000112656 187.56 1406.06 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
75. rps3 ENSDARG00000103007 187.56 1406.06 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
76. rplp0 ENSDARG00000051783 186.10 1395.11 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
77. rps23 ENSDARG00000021838 186.10 1395.11 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
78. bhmt ENSDARG00000013430 184.65 1384.24 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
79. rplp1 ENSDARG00000021864 181.74 1362.43 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
80. rps2 ENSDARG00000077291 181.74 1362.43 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
81. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 181.74 1362.43 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
82. rpl27 ENSDARG00000015128 173.02 1297.06 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
83. rps27a ENSDARG00000032725, ENSDARG00000114059 173.02 1297.06 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
84. eif5a ENSDARG00000017235 171.57 1286.19 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
85. id1 ENSDARG00000040764 168.66 1264.37 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
86. rps14 ENSDARG00000036629 164.30 1231.69 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
87. cfl1l ENSDARG00000012972 162.84 1220.74 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
88. ldb3b ENSDARG00000099974 162.84 1220.74 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
89. atp5g3b 161.39 1209.87 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
90. zgc:92533 zgc:92533 161.39 1209.87
91. slc25a4 ENSDARG00000027355, ENSDARG00000112318 159.93 1198.93 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
92. tmem38a ENSDARG00000024047 159.93 1198.93 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 152.66 1144.43 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. rps15 ENSDARG00000070849, ENSDARG00000110979 152.66 1144.43 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
95. zgc:161979_1 zgc:161979_1 151.21 1133.56
96. rps26l ENSDARG00000030408 149.76 1122.69 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
97. rpl15 ENSDARG00000009285 148.30 1111.74 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
98. rps19 ENSDARG00000030602 146.85 1100.87 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
99. fkbp1aa ENSDARG00000022684 145.39 1089.93 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
100. pvalb4 ENSDARG00000024433 145.39 1089.93 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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