Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s3.

Sample reads: 133,390. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17600.97 131950.96
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3790.87 28419.40 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1241.77 9309.30
4. hmga1a ENSDARG00000028335 1226.16 9192.28 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. ptmab ENSDARG00000101766 1087.23 8150.75 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
6. tmsb4x ENSDARG00000077777 1059.13 7940.09 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. actb2 ENSDARG00000037870 810.94 6079.46 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. eef1a1l1 ENSDARG00000020850 729.76 5470.87 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. ppiaa ENSDARG00000009212 699.32 5242.66 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
10. mt-co2 ENSDARG00000063908 696.20 5219.27 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. AL954137.2 ENSDARG00000114408 670.45 5026.23
12. mt-nd2 ENSDARG00000063899 652.49 4891.59 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-atp6 ENSDARG00000063911 605.66 4540.51 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. mt-co3 ENSDARG00000063912 604.10 4528.82 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. mt-nd4 ENSDARG00000063917 544.79 4084.18 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. eef2b ENSDARG00000100371, ENSDARG00000109247 540.10 4049.02 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
17. id1 ENSDARG00000040764 534.64 4008.09 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
18. hmgn2 ENSDARG00000099572 526.05 3943.69 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
19. si:dkey-151g10.6 si:dkey-151g10.6 487.81 3657.01
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 471.42 3534.14 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. actb1 ENSDARG00000037746, ENSDARG00000113649 469.08 3516.60 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
22. pabpc1a ENSDARG00000017219 382.44 2867.08 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
23. pcna ENSDARG00000054155 369.17 2767.59 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
24. hnrnpab hnrnpab 363.71 2726.66
25. rpl18a ENSDARG00000025073 355.13 2662.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. h3f3a 350.44 2627.18 H3 histone, family 3A, transcript variant X1
27. rpl8 ENSDARG00000014867 305.17 2287.80 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
28. rplp1 ENSDARG00000021864 299.71 2246.87 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
29. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 297.37 2229.32 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
30. rps23 ENSDARG00000021838 292.69 2194.24 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
31. mt-nd1 ENSDARG00000063895 290.34 2176.62 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
32. hsp90ab1 ENSDARG00000029150 289.56 2170.77 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
33. rpl26 ENSDARG00000102317 288.00 2159.08 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
34. mt-cyb ENSDARG00000063924 284.88 2135.69 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. rpl11 ENSDARG00000043509 284.88 2135.69 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
36. zgc:92533 zgc:92533 284.10 2129.84
37. cirbp cirbp 281.76 2112.30
38. rpl21 ENSDARG00000010516, ENSDARG00000110263 274.73 2059.60 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 273.17 2047.90 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. rpl23 ENSDARG00000053457 273.17 2047.90 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 264.59 1983.58 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. si:dkeyp-86f7.3 si:dkeyp-86f7.3 264.59 1983.58
43. zgc:123194 zgc:123194 261.47 1960.19
44. fkbp1aa ENSDARG00000022684 260.69 1954.34 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
45. col1a1a ENSDARG00000012405, ENSDARG00000116113 255.22 1913.33 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
46. hnrnpa0a ENSDARG00000089302 255.22 1913.33 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
47. rps27a ENSDARG00000032725, ENSDARG00000114059 255.22 1913.33 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
48. si:ch1073-429i10.3 253.66 1901.64 si:ch1073-429i10.3, transcript variant X2
49. cfl1 ENSDARG00000021124 246.64 1849.01 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
50. gch2 ENSDARG00000099101 242.73 1819.70 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
51. rpl9 ENSDARG00000037350, ENSDARG00000112384 240.39 1802.16 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
52. rps26l ENSDARG00000030408 237.27 1778.77 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
53. eif5a ENSDARG00000017235 220.88 1655.89 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. khdrbs1a ENSDARG00000052856 213.86 1603.27 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
55. rpsa ENSDARG00000019181 213.08 1597.42 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
56. rpl19 ENSDARG00000013307 210.73 1579.80 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
57. marcksb ENSDARG00000008803 206.05 1544.72 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
58. rpl36a ENSDARG00000058105, ENSDARG00000112656 206.05 1544.72 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
59. top1l ENSDARG00000070545 205.27 1538.87 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
60. rps19 ENSDARG00000030602 195.90 1468.62 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
61. pbx4 ENSDARG00000052150 194.34 1456.93 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
62. rps14 ENSDARG00000036629 192.78 1445.23 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
63. ptmaa ENSDARG00000021113, ENSDARG00000110479 191.22 1433.54 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
64. icn ENSDARG00000009978 190.44 1427.69 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
65. tuba8l ENSDARG00000042708 189.66 1421.84 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
66. rps2 ENSDARG00000077291 188.10 1410.15 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. ran ENSDARG00000057026 184.98 1386.76 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
68. rps4x ENSDARG00000014690 184.98 1386.76 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
69. ppiab ENSDARG00000103994 181.86 1363.37 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
70. mt-co1 ENSDARG00000063905 181.08 1357.52 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
71. rplp0 ENSDARG00000051783 181.08 1357.52 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
72. rpl5b ENSDARG00000015862, ENSDARG00000109661 179.51 1345.75 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
73. rps12 ENSDARG00000036875, ENSDARG00000115157 179.51 1345.75 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
74. rps27.1 ENSDARG00000023298 178.73 1339.90 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
75. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 174.83 1310.67 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
76. rps15a ENSDARG00000010160 173.27 1298.97 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
77. h3f3d ENSDARG00000045248 170.15 1275.58 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
78. zgc:165571 zgc:165571 168.59 1263.89
79. rps10 ENSDARG00000034897 167.03 1252.19 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
80. rps20 ENSDARG00000036044 166.25 1246.34 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
81. h2afvb ENSDARG00000116491 165.47 1240.50 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
82. ccnd1 ENSDARG00000101637 164.68 1234.57 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
83. marcksl1a ENSDARG00000039034 164.68 1234.57 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
84. ddx5 ENSDARG00000038068 160.78 1205.34 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
85. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 160.00 1199.49 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
86. rpl27 ENSDARG00000015128 160.00 1199.49 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
87. rps15 ENSDARG00000070849, ENSDARG00000110979 160.00 1199.49 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
88. si:ch211-117m20.5 ENSDARG00000091996 160.00 1199.49 si:ch211-117m20.5 [Source:ZFIN;Acc:ZDB-GENE-030131-12]
89. rps3 ENSDARG00000103007 157.66 1181.95 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
90. cfl1l ENSDARG00000012972 156.10 1170.25 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
91. faua ENSDARG00000099022 155.32 1164.40 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
92. rps9 ENSDARG00000011405, ENSDARG00000113248 154.54 1158.56 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
93. rpl18 ENSDARG00000029533 153.76 1152.71 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
94. rps5 ENSDARG00000043453 152.98 1146.86 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
95. rpl15 ENSDARG00000009285 152.20 1141.01 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
96. rpl36 ENSDARG00000100588 152.20 1141.01 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
97. rpl35a ENSDARG00000088030 150.64 1129.32 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
98. seta ENSDARG00000031495 150.64 1129.32 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
99. rps6 ENSDARG00000019778 149.86 1123.47 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
100. fabp3 ENSDARG00000023290 145.95 1094.16 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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