Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s28.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16257.86 121861.01
2. tpma ENSDARG00000033683 3992.97 29929.36 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3429.04 25702.42 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckma ENSDARG00000035327, ENSDARG00000114671 3339.50 25031.27 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3241.95 24300.08 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. atp2a1 ENSDARG00000020574 2262.42 16958.00 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
7. ckmb ENSDARG00000040565 2235.69 16757.64 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. mylz3 ENSDARG00000017441 2162.19 16206.72 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. actc1b ENSDARG00000099197 1711.85 12831.19 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1397.81 10477.30 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. acta1b ENSDARG00000055618 1289.56 9665.91 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1269.52 9515.70 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. pvalb1 ENSDARG00000037789 1171.97 8784.52 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
14. mt-co2 ENSDARG00000063908 970.18 7272.00 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. tmsb4x ENSDARG00000077777 960.83 7201.91 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
16. mt-nd4 ENSDARG00000063917 940.78 7051.63 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. mt-atp6 ENSDARG00000063911 939.44 7041.59 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. mt-nd2 ENSDARG00000063899 934.10 7001.56 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
19. apoc1l apoc1l 873.96 6550.78
20. actb2 ENSDARG00000037870 853.92 6400.57 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. mt-co3 ENSDARG00000063912 780.42 5849.65 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. apoa1b ENSDARG00000101324 745.68 5589.25 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
23. tnnt3a ENSDARG00000030270 740.33 5549.15 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. tnnt3b ENSDARG00000068457 700.24 5248.66 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
25. apoa2 ENSDARG00000015866 618.72 4637.62 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. tnni2a.4 ENSDARG00000029069 616.05 4617.61 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
27. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 614.71 4607.57 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
28. apobb apobb 609.37 4567.54
29. ttna ttna 590.66 4427.30
30. eef1a1l1 ENSDARG00000020850 578.63 4337.13 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. mt-nd1 ENSDARG00000063895 542.55 4066.69 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
32. myhz1.2 ENSDARG00000067995 542.55 4066.69 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
33. mylpfb ENSDARG00000002589 538.54 4036.63 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
34. mt-cyb ENSDARG00000063924 522.51 3916.48 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. acta1a ENSDARG00000036371 518.50 3886.42 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
36. si:ch211-226o13.2 449.01 3365.56 si:ch211-226o13.2
37. actb1 ENSDARG00000037746, ENSDARG00000113649 432.97 3245.33 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. myhz1.3 ENSDARG00000067997 407.58 3055.02 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
39. myl1 ENSDARG00000014196 394.22 2954.88 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
40. ttnb ttnb 366.16 2744.56
41. col1a1a ENSDARG00000012405, ENSDARG00000116113 336.76 2524.19 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
42. si:dkey-151g10.6 si:dkey-151g10.6 328.74 2464.08
43. ppiaa ENSDARG00000009212 323.39 2423.97 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
44. nme2b.2 ENSDARG00000099420 304.68 2283.73 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
45. btf3 ENSDARG00000035400, ENSDARG00000116462 292.66 2193.64 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
46. col1a1b ENSDARG00000035809 289.98 2173.55 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
47. apoeb ENSDARG00000040295 285.98 2143.57 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
48. zgc:112425 zgc:112425 273.95 2053.40
49. apoa1a ENSDARG00000012076, ENSDARG00000110395 265.93 1993.28 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
50. hspa8 ENSDARG00000068992, ENSDARG00000114726 265.93 1993.28 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
51. rpl18a ENSDARG00000025073 265.93 1993.28 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. zgc:66286 zgc:66286 249.89 1873.05
53. gapdh ENSDARG00000043457 245.89 1843.07 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
54. mt-co1 ENSDARG00000063905 243.21 1822.98 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
55. eef2b ENSDARG00000100371, ENSDARG00000109247 241.88 1813.01 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
56. rpl10a ENSDARG00000042905, ENSDARG00000115649 241.88 1813.01 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
57. rpl23 ENSDARG00000053457 240.54 1802.97 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
58. rpl26 ENSDARG00000102317 235.20 1762.94 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. ATP5B 232.52 1742.86 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
60. hmga1a ENSDARG00000028335 232.52 1742.86 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
61. ptmab ENSDARG00000101766 232.52 1742.86 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
62. zgc:161979_1 zgc:161979_1 228.51 1712.80
63. aldoab ENSDARG00000034470 219.16 1642.72 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
64. rpl8 ENSDARG00000014867 212.48 1592.65 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
65. cyt1l ENSDARG00000036832 211.14 1582.60 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
66. rpl21 ENSDARG00000010516, ENSDARG00000110263 209.80 1572.56 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
67. pkmb ENSDARG00000099860 201.79 1512.52 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
68. col2a1a ENSDARG00000069093, ENSDARG00000111202 200.45 1502.48 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
69. apoa4 apoa4 197.78 1482.46
70. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 195.11 1462.45 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
71. bhmt ENSDARG00000013430 193.77 1452.41 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
72. rplp1 ENSDARG00000021864 193.77 1452.41 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
73. rpl36a ENSDARG00000058105, ENSDARG00000112656 191.10 1432.39 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
74. rps23 ENSDARG00000021838 189.76 1422.35 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
75. rpl11 ENSDARG00000043509 187.09 1402.34 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
76. rps26l ENSDARG00000030408 187.09 1402.34 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
77. cfl1l ENSDARG00000012972 185.75 1392.29 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
78. rpsa ENSDARG00000019181 184.41 1382.25 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
79. zgc:92533 zgc:92533 184.41 1382.25
80. rps27a ENSDARG00000032725, ENSDARG00000114059 183.08 1372.28 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
81. fabp3 ENSDARG00000023290 180.41 1352.27 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
82. eif5a ENSDARG00000017235 179.07 1342.22 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
83. pabpc1a ENSDARG00000017219 179.07 1342.22 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
84. AC024175.17 AC024175.17 177.73 1332.18
85. myl10 ENSDARG00000062592 172.39 1292.15 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
86. tpm3 ENSDARG00000005162 168.38 1262.09 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
87. rplp0 ENSDARG00000051783 167.04 1252.05 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
88. rps2 ENSDARG00000077291 167.04 1252.05 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
89. rps14 ENSDARG00000036629 165.71 1242.08 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
90. rpl19 ENSDARG00000013307 161.70 1212.02 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
91. rps3 ENSDARG00000103007 161.70 1212.02 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
92. sepp1a 161.70 1212.02 selenoprotein P, plasma, 1a
93. atp5g3b 159.02 1191.94 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
94. rps20 ENSDARG00000036044 157.69 1181.97 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
95. si:dkeyp-113d7.4 si:dkeyp-113d7.4 155.01 1161.88
96. gch2 ENSDARG00000099101 152.34 1141.87 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
97. rps27.1 ENSDARG00000023298 152.34 1141.87 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. zgc:161979 zgc:161979 151.01 1131.90
99. rps15 ENSDARG00000070849, ENSDARG00000110979 148.33 1111.81 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
100. slc25a4 ENSDARG00000027355, ENSDARG00000112318 147.00 1101.84 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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