Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s27.

Sample reads: 133,416. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11183.43 83824.02
2. tpma ENSDARG00000033683 4223.36 31655.67 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3803.49 28508.59 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3342.58 25053.90 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. ckma ENSDARG00000035327, ENSDARG00000114671 3272.83 24531.09 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. mylz3 ENSDARG00000017441 2366.07 17734.59 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. ckmb ENSDARG00000040565 2344.18 17570.51 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. atp2a1 ENSDARG00000020574 2117.15 15868.84 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. actc1b ENSDARG00000099197 1907.90 14300.43 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1328.01 9953.93 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. acta1b ENSDARG00000055618 1325.27 9933.40 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1304.76 9779.67 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. pvalb1 ENSDARG00000037789 1170.72 8774.99 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
14. mt-nd2 ENSDARG00000063899 1096.87 8221.45 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. mt-atp6 ENSDARG00000063911 1068.15 8006.19 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. mt-co2 ENSDARG00000063908 1059.94 7944.65 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. tmsb4x ENSDARG00000077777 1051.74 7883.19 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
18. mt-nd4 ENSDARG00000063917 991.56 7432.12 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. apoc1l apoc1l 940.96 7052.85
20. actb2 ENSDARG00000037870 910.87 6827.31 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. mt-co3 ENSDARG00000063912 908.13 6806.78 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. apoa1b ENSDARG00000101324 790.51 5925.17 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
23. tnnt3a ENSDARG00000030270 749.48 5617.63 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. apoa2 ENSDARG00000015866 739.91 5545.90 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
25. eef1a1l1 ENSDARG00000020850 678.36 5084.56 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. tnnt3b ENSDARG00000068457 670.16 5023.10 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
27. tnni2a.4 ENSDARG00000029069 637.33 4777.03 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
28. apobb apobb 619.55 4643.76
29. mt-nd1 ENSDARG00000063895 549.80 4120.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. acta1a ENSDARG00000036371 541.60 4059.50 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. mylpfb ENSDARG00000002589 510.14 3823.69 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
32. mt-cyb ENSDARG00000063924 507.41 3803.23 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
33. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 488.26 3659.69 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
34. myl1 ENSDARG00000014196 469.11 3516.16 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
35. ttna ttna 462.27 3464.89
36. si:ch211-226o13.2 440.39 3300.89 si:ch211-226o13.2
37. actb1 ENSDARG00000037746, ENSDARG00000113649 439.02 3290.62 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. myhz1.2 ENSDARG00000067995 425.34 3188.08 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
39. myhz1.3 ENSDARG00000067997 378.84 2839.55 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
40. ppiaa ENSDARG00000009212 373.37 2798.55 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
41. col1a1a ENSDARG00000012405, ENSDARG00000116113 366.54 2747.36 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
42. apoeb ENSDARG00000040295 339.18 2542.28 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
43. hspa8 ENSDARG00000068992, ENSDARG00000114726 321.40 2409.01 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
44. apoa1a ENSDARG00000012076, ENSDARG00000110395 313.20 2347.55 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
45. btf3 ENSDARG00000035400, ENSDARG00000116462 310.46 2327.01 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
46. col1a1b ENSDARG00000035809 306.36 2296.28 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
47. si:dkey-151g10.6 si:dkey-151g10.6 306.36 2296.28
48. zgc:112425 zgc:112425 299.52 2245.02
49. hmga1a ENSDARG00000028335 296.78 2224.48 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
50. zgc:161979_1 zgc:161979_1 291.31 2183.48
51. nme2b.2 ENSDARG00000099420 276.27 2070.75 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
52. rpl18a ENSDARG00000025073 274.90 2060.48 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
53. ttnb ttnb 270.80 2029.75
54. ptmab ENSDARG00000101766 265.33 1988.75 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
55. rpl10a ENSDARG00000042905, ENSDARG00000115649 265.33 1988.75 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
56. rpl8 ENSDARG00000014867 263.96 1978.48 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
57. rpl23 ENSDARG00000053457 261.22 1957.94 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
58. bhmt ENSDARG00000013430 254.39 1906.75 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
59. pkmb ENSDARG00000099860 250.28 1875.94 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
60. eef2b ENSDARG00000100371, ENSDARG00000109247 243.44 1824.67 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
61. gapdh ENSDARG00000043457 242.08 1814.48 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
62. mt-co1 ENSDARG00000063905 236.61 1773.48 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
63. rpl19 ENSDARG00000013307 232.50 1742.68 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
64. rplp1 ENSDARG00000021864 229.77 1722.21 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
65. eif5a ENSDARG00000017235 224.30 1681.21 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. rpl26 ENSDARG00000102317 224.30 1681.21 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
67. aldoab ENSDARG00000034470 222.93 1670.94 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
68. rps23 ENSDARG00000021838 222.93 1670.94 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
69. sepp1a 220.19 1650.41 selenoprotein P, plasma, 1a
70. col2a1a ENSDARG00000069093, ENSDARG00000111202 218.83 1640.21 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
71. rps26l ENSDARG00000030408 217.46 1629.94 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
72. rpl9 ENSDARG00000037350, ENSDARG00000112384 214.72 1609.41 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
73. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 211.99 1588.94 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
74. cfl1l ENSDARG00000012972 209.25 1568.41 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
75. pabpc1a ENSDARG00000017219 209.25 1568.41 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
76. rps27a ENSDARG00000032725, ENSDARG00000114059 209.25 1568.41 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
77. zgc:66286 zgc:66286 207.89 1558.21
78. tmem38a ENSDARG00000024047 206.52 1547.95 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
79. atp5g3b 203.78 1527.41 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
80. rps14 ENSDARG00000036629 202.41 1517.14 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
81. rps2 ENSDARG00000077291 196.94 1476.14 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 192.84 1445.41 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. si:dkeyp-113d7.4 si:dkeyp-113d7.4 192.84 1445.41
84. ATP5B 190.11 1424.95 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
85. zgc:92533 zgc:92533 190.11 1424.95
86. col9a1 col9a1 186.00 1394.14
87. hbae3 ENSDARG00000079305 184.64 1383.95 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
88. rpl11 ENSDARG00000043509 180.53 1353.14 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
89. rpl21 ENSDARG00000010516, ENSDARG00000110263 180.53 1353.14 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
90. rps3 ENSDARG00000103007 177.80 1332.68 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
91. myl10 ENSDARG00000062592 175.06 1312.14 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
92. tpm3 ENSDARG00000005162 175.06 1312.14 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
93. rpsa ENSDARG00000019181 172.33 1291.68 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
94. cyt1l ENSDARG00000036832 169.59 1271.14 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
95. rps20 ENSDARG00000036044 168.22 1260.87 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
96. rps6 ENSDARG00000019778 160.02 1199.41 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
97. pvalb4 ENSDARG00000024433 158.65 1189.14 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
98. rpl18 ENSDARG00000029533 155.91 1168.60 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
99. zgc:113413 zgc:113413 155.91 1168.60
100. id1 ENSDARG00000040764 153.18 1148.14 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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