Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo2, section s19.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22969.37 172195.04
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4852.85 36380.48 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. hbae3 ENSDARG00000079305 2792.29 20933.03 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
4. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1979.77 14841.79 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
5. tpma ENSDARG00000033683 1778.40 13332.17 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1548.93 11611.90 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. apoc1l apoc1l 1462.29 10962.39
8. tmsb4x ENSDARG00000077777 1452.93 10892.22 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. hbbe1.1 ENSDARG00000113599 1421.32 10655.24 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
10. apoa1b ENSDARG00000101324 1332.34 9988.19 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
11. mylz3 ENSDARG00000017441 1162.58 8715.54 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
12. ckma ENSDARG00000035327, ENSDARG00000114671 1145.01 8583.82 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. ckmb ENSDARG00000040565 1098.18 8232.75 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
14. apoa2 ENSDARG00000015866 1082.96 8118.65 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
15. atp2a1 ENSDARG00000020574 938.96 7039.12 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. actc1b ENSDARG00000099197 885.10 6635.35 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
17. apobb apobb 837.10 6275.51
18. actb2 ENSDARG00000037870 821.88 6161.41 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. hbbe1.1_1 ENSDARG00000113599 812.52 6091.24 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
20. mt-co2 ENSDARG00000063908 797.30 5977.14 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
21. mt-nd2 ENSDARG00000063899 773.88 5801.57 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. mt-nd4 ENSDARG00000063917 668.51 5011.64 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
23. apoa1a ENSDARG00000012076, ENSDARG00000110395 666.17 4994.09 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
24. mt-co3 ENSDARG00000063912 666.17 4994.09 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. mt-atp6 ENSDARG00000063911 625.19 4686.88 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
26. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 608.80 4564.01 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
27. tnnc2 ENSDARG00000070835, ENSDARG00000111155 581.87 4362.12 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
28. hbae1_1 538.55 4037.36 hemoglobin, alpha embryonic 1
29. bhmt ENSDARG00000013430 524.51 3932.11 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
30. zgc:161979_1 zgc:161979_1 498.75 3738.99
31. pvalb1 ENSDARG00000037789 496.41 3721.45 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
32. apoeb ENSDARG00000040295 483.53 3624.89 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
33. eef1a1l1 ENSDARG00000020850 476.50 3572.19 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
34. acta1b ENSDARG00000055618 470.65 3528.33 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
35. actb1 ENSDARG00000037746, ENSDARG00000113649 446.06 3343.99 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. tnnt3a ENSDARG00000030270 419.14 3142.18 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
37. zgc:161979 zgc:161979 389.87 2922.75
38. mt-nd1 ENSDARG00000063895 385.18 2887.59 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
39. si:dkey-151g10.6 si:dkey-151g10.6 366.45 2747.17
40. mt-cyb ENSDARG00000063924 357.09 2677.01 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. hbae1 333.67 2501.43 hemoglobin, alpha embryonic 1
42. myhz1.2 ENSDARG00000067995 330.16 2475.12 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
43. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 317.28 2378.56 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
44. ttna ttna 311.43 2334.70
45. zgc:112425 zgc:112425 310.25 2325.86
46. tnnt3b ENSDARG00000068457 309.08 2317.09 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
47. tnni2a.4 ENSDARG00000029069 305.57 2290.77 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
48. hspa8 ENSDARG00000068992, ENSDARG00000114726 304.40 2282.00 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
49. ppiaa ENSDARG00000009212 282.16 2115.28 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
50. eef2b ENSDARG00000100371, ENSDARG00000109247 280.99 2106.50 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
51. si:dkey-150i13.2 ENSDARG00000071052 271.62 2036.26 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
52. hmga1a ENSDARG00000028335 269.28 2018.72 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
53. ctsla ENSDARG00000007836 268.11 2009.95 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
54. ttnb ttnb 262.25 1966.02
55. apoa4 apoa4 257.57 1930.93
56. sepp1a 250.55 1878.30 selenoprotein P, plasma, 1a
57. ptmab ENSDARG00000101766 244.69 1834.37 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
58. acta1a ENSDARG00000036371 237.67 1781.75 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
59. rpl8 ENSDARG00000014867 228.30 1711.50 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
60. rpl18a ENSDARG00000025073 225.96 1693.96 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
61. btf3 ENSDARG00000035400, ENSDARG00000116462 206.06 1544.78 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
62. zgc:92533 zgc:92533 202.54 1518.39
63. fth1a ENSDARG00000015551 199.03 1492.07 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
64. zgc:153129 zgc:153129 197.86 1483.30
65. rpl26 ENSDARG00000102317 193.18 1448.22 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
66. gamt ENSDARG00000070844, ENSDARG00000109945 189.66 1421.83 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
67. rpl23 ENSDARG00000053457 186.15 1395.52 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
68. rps27a ENSDARG00000032725, ENSDARG00000114059 184.98 1386.74 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
69. col1a1b ENSDARG00000035809 180.30 1351.66 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
70. myl1 ENSDARG00000014196 177.96 1334.12 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
71. pabpc1a ENSDARG00000017219 177.96 1334.12 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
72. mylpfb ENSDARG00000002589 175.62 1316.57 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
73. rpl10a ENSDARG00000042905, ENSDARG00000115649 174.44 1307.73 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
74. col1a1a ENSDARG00000012405, ENSDARG00000116113 173.27 1298.96 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
75. mt-co1 ENSDARG00000063905 170.93 1281.42 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
76. rps23 ENSDARG00000021838 167.42 1255.10 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
77. rpl21 ENSDARG00000010516, ENSDARG00000110263 166.25 1246.33 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
78. rplp1 ENSDARG00000021864 166.25 1246.33 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
79. icn ENSDARG00000009978 162.74 1220.02 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
80. rpsa ENSDARG00000019181 161.57 1211.25 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
81. slc4a1a ENSDARG00000012881 161.57 1211.25 solute carrier family 4 (anion exchanger), member 1a (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-010525-1]
82. cyt1l ENSDARG00000036832 159.22 1193.63 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
83. si:ch211-226o13.2 159.22 1193.63 si:ch211-226o13.2
84. cfl1l ENSDARG00000012972 156.88 1176.09 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
85. rpl36a ENSDARG00000058105, ENSDARG00000112656 156.88 1176.09 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
86. rpl11 ENSDARG00000043509 151.03 1132.23 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
87. nme2b.2 ENSDARG00000099420 149.86 1123.46 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
88. rps2 ENSDARG00000077291 144.00 1079.53 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
89. rplp0 ENSDARG00000051783 140.49 1053.21 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
90. tfa ENSDARG00000016771 136.98 1026.90 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
91. rps26l ENSDARG00000030408 135.81 1018.13 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
92. AC024175.17 AC024175.17 134.64 1009.36
93. rpl19 ENSDARG00000013307 134.64 1009.36 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
94. krt8 ENSDARG00000058358, ENSDARG00000109279 133.47 1000.59 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
95. h3f3a 132.30 991.82 H3 histone, family 3A, transcript variant X1
96. rpl9 ENSDARG00000037350, ENSDARG00000112384 132.30 991.82 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
97. aldoab ENSDARG00000034470 129.96 974.27 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
98. krt5 ENSDARG00000058371, ENSDARG00000112017 129.96 974.27 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
99. col2a1a ENSDARG00000069093, ENSDARG00000111202 128.78 965.43 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
100. rps3 ENSDARG00000103007 128.78 965.43 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA