Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s16.

Sample reads: 133,416. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19712.19 147750.11
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3235.98 24254.86 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. hbae3 ENSDARG00000079305 1986.87 14892.32 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
4. hbbe1.1 ENSDARG00000113599 1077.33 8074.98 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
5. tmsb4x ENSDARG00000077777 1064.01 7975.15 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. hbbe3 ENSDARG00000038147, ENSDARG00000109344 962.14 7211.59 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
7. tpma ENSDARG00000033683 940.83 7051.87 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. actb2 ENSDARG00000037870 863.59 6472.92 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 797.68 5978.90 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. mt-co2 ENSDARG00000063908 755.06 5659.45 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. mt-nd2 ENSDARG00000063899 717.78 5380.02 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. zgc:112425 zgc:112425 684.48 5130.43
13. ckma ENSDARG00000035327, ENSDARG00000114671 682.49 5115.51 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
14. eef1a1l1 ENSDARG00000020850 657.18 4925.81 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. mt-co3 ENSDARG00000063912 631.22 4731.23 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. ptmab ENSDARG00000101766 614.57 4606.43 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
17. mt-nd4 ENSDARG00000063917 609.24 4566.48 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. apoc1l apoc1l 577.28 4326.93
19. hmga1a ENSDARG00000028335 564.63 4232.11 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
20. hbbe1.1_1 ENSDARG00000113599 557.97 4182.19 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
21. atp2a1 ENSDARG00000020574 557.31 4177.24 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
22. apoa1b ENSDARG00000101324 543.99 4077.40 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
23. mt-atp6 ENSDARG00000063911 538.66 4037.45 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
24. ppiaa ENSDARG00000009212 532.67 3992.56 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
25. ckmb ENSDARG00000040565 528.01 3957.63 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
26. mylz3 ENSDARG00000017441 508.04 3807.95 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
27. hspa8 ENSDARG00000068992, ENSDARG00000114726 467.42 3503.48 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
28. hbae1_1 441.45 3308.83 hemoglobin, alpha embryonic 1
29. apoa2 ENSDARG00000015866 436.79 3273.90 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
30. actb1 ENSDARG00000037746, ENSDARG00000113649 410.16 3074.30 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
31. si:dkey-151g10.6 si:dkey-151g10.6 405.50 3039.37
32. actc1b ENSDARG00000099197 386.19 2894.64 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
33. pabpc1a ENSDARG00000017219 378.20 2834.75 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
34. eef2b ENSDARG00000100371, ENSDARG00000109247 372.87 2794.80 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
35. apobb apobb 359.55 2694.96
36. tnnc2 ENSDARG00000070835, ENSDARG00000111155 354.23 2655.08 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
37. AL954137.2 ENSDARG00000114408 342.24 2565.21
38. mt-nd1 ENSDARG00000063895 326.26 2445.44 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
39. pvalb1 ENSDARG00000037789 315.61 2365.61 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
40. mt-cyb ENSDARG00000063924 311.61 2335.63 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 310.28 2325.66 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
42. rplp1 ENSDARG00000021864 301.63 2260.83 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
43. rpl8 ENSDARG00000014867 299.63 2245.84 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
44. id1 ENSDARG00000040764 286.31 2146.00 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
45. acta1b ENSDARG00000055618 285.65 2141.05 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
46. apoa1a ENSDARG00000012076, ENSDARG00000110395 274.99 2061.15 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
47. btf3 ENSDARG00000035400, ENSDARG00000116462 274.99 2061.15 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
48. hbae1 269.00 2016.25 hemoglobin, alpha embryonic 1
49. si:dkeyp-86f7.3 si:dkeyp-86f7.3 267.67 2006.29
50. rpl21 ENSDARG00000010516, ENSDARG00000110263 267.00 2001.26 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
51. rpl18a ENSDARG00000025073 260.34 1951.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. rpl10a ENSDARG00000042905, ENSDARG00000115649 254.35 1906.45 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
53. rpl26 ENSDARG00000102317 254.35 1906.45 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
54. hmgn2 ENSDARG00000099572 249.69 1871.52 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
55. rpl11 ENSDARG00000043509 241.70 1811.63 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
56. rps23 ENSDARG00000021838 240.37 1801.66 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
57. he1a 239.04 1791.69 hatching enzyme 1a, transcript variant X1
58. rpl9 ENSDARG00000037350, ENSDARG00000112384 239.04 1791.69 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
59. zgc:161979_1 zgc:161979_1 239.04 1791.69
60. hsp90ab1 ENSDARG00000029150 236.37 1771.68 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
61. rpsa ENSDARG00000019181 229.71 1721.76 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
62. bhmt ENSDARG00000013430 223.06 1671.92 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
63. fth1a ENSDARG00000015551 223.06 1671.92 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
64. eif5a ENSDARG00000017235 221.06 1656.93 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
65. zgc:174855 ENSDARG00000094559 219.73 1646.96 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
66. rpl36a ENSDARG00000058105, ENSDARG00000112656 217.73 1631.97 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
67. rps14 ENSDARG00000036629 207.08 1552.14 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
68. rpl19 ENSDARG00000013307 205.74 1542.10 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
69. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 203.75 1527.18 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
70. cfl1 ENSDARG00000021124 199.75 1497.20 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
71. rps2 ENSDARG00000077291 199.09 1492.25 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. hnrnpab hnrnpab 192.43 1442.33
73. rps26l ENSDARG00000030408 191.76 1437.31 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
74. cirbp cirbp 188.43 1412.35
75. h3f3a 186.44 1397.44 H3 histone, family 3A, transcript variant X1
76. myhz1.2 ENSDARG00000067995 186.44 1397.44 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
77. rps27a ENSDARG00000032725, ENSDARG00000114059 186.44 1397.44 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
78. mt-co1 ENSDARG00000063905 185.77 1392.41 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
79. si:ch1073-429i10.3 185.77 1392.41 si:ch1073-429i10.3, transcript variant X2
80. tnnt3b ENSDARG00000068457 185.10 1387.39 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
81. cyt1l ENSDARG00000036832 181.77 1362.43 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
82. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 175.12 1312.59 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
83. rps9 ENSDARG00000011405, ENSDARG00000113248 171.79 1287.63 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
84. zgc:92533 zgc:92533 166.46 1247.68
85. rps20 ENSDARG00000036044 165.13 1237.71 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. tnnt3a ENSDARG00000030270 165.13 1237.71 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
87. rps3 ENSDARG00000103007 161.80 1212.75 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
88. rpl5b ENSDARG00000015862, ENSDARG00000109661 161.13 1207.73 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
89. rps6 ENSDARG00000019778 161.13 1207.73 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
90. si:ch211-226o13.2 159.14 1192.81 si:ch211-226o13.2
91. ttna ttna 159.14 1192.81
92. rplp0 ENSDARG00000051783 157.14 1177.82 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
93. rps27.1 ENSDARG00000023298 155.81 1167.85 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
94. col1a1a ENSDARG00000012405, ENSDARG00000116113 154.47 1157.81 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
95. pcna ENSDARG00000054155 154.47 1157.81 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
96. rpl27 ENSDARG00000015128 154.47 1157.81 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
97. ptmaa ENSDARG00000021113, ENSDARG00000110479 153.81 1152.86 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
98. apoeb ENSDARG00000040295 151.81 1137.87 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
99. fkbp1aa ENSDARG00000022684 151.15 1132.92 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
100. rpl23 ENSDARG00000053457 151.15 1132.92 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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