Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s10.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18747.17 140539.02
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1578.11 11830.37 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. hmga1a ENSDARG00000028335 1144.40 8579.05 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
4. ptmab ENSDARG00000101766 1129.51 8467.42 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
5. zgc:112425 zgc:112425 1022.20 7662.97
6. mt-co2 ENSDARG00000063908 976.98 7323.98 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. tmsb4x ENSDARG00000077777 886.81 6648.01 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. actb2 ENSDARG00000037870 850.57 6376.34 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. eef1a1l1 ENSDARG00000020850 803.94 6026.77 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
10. ppiaa ENSDARG00000009212 797.76 5980.44 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. AL954137.2 ENSDARG00000114408 618.83 4639.09
12. hspa8 ENSDARG00000068992, ENSDARG00000114726 594.95 4460.07 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
13. si:dkey-151g10.6 si:dkey-151g10.6 586.52 4396.87
14. mt-nd2 ENSDARG00000063899 563.21 4222.13 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. hmgn2 ENSDARG00000099572 528.10 3958.93 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
16. eef2b ENSDARG00000100371, ENSDARG00000109247 519.39 3893.63 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
17. mt-co3 ENSDARG00000063912 519.39 3893.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. mt-nd4 ENSDARG00000063917 498.32 3735.68 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. id1 ENSDARG00000040764 470.23 3525.10 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
20. mt-atp6 ENSDARG00000063911 462.37 3466.18 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. pabpc1a ENSDARG00000017219 436.24 3270.29 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
22. actb1 ENSDARG00000037746, ENSDARG00000113649 423.04 3171.34 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
23. hsp90ab1 ENSDARG00000029150 390.74 2929.20 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
24. h3f3a 375.29 2813.38 H3 histone, family 3A, transcript variant X1
25. rpl10a ENSDARG00000042905, ENSDARG00000115649 366.86 2750.18 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
26. hnrnpab hnrnpab 357.59 2680.69
27. rpl8 ENSDARG00000014867 357.03 2676.49 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
28. rplp1 ENSDARG00000021864 336.24 2520.64 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
29. rpl21 ENSDARG00000010516, ENSDARG00000110263 332.03 2489.08 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
30. cirbp cirbp 326.97 2451.15
31. rpl18a ENSDARG00000025073 323.60 2425.88 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
32. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 309.27 2318.46 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
33. rpl23 ENSDARG00000053457 299.16 2242.67 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
34. mt-nd1 ENSDARG00000063895 294.67 2209.01 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
35. cfl1 ENSDARG00000021124 293.54 2200.54 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
36. si:dkeyp-86f7.3 si:dkeyp-86f7.3 289.89 2173.17
37. si:ch1073-429i10.3 281.46 2109.98 si:ch1073-429i10.3, transcript variant X2
38. mt-cyb ENSDARG00000063924 279.78 2097.38 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. khdrbs1a ENSDARG00000052856 277.81 2082.62 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
40. rpl26 ENSDARG00000102317 276.41 2072.12 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 271.91 2038.39 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. rpsa ENSDARG00000019181 269.67 2021.59 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
43. rps27a ENSDARG00000032725, ENSDARG00000114059 269.39 2019.49 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
44. rpl11 ENSDARG00000043509 267.98 2008.92 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
45. rpl9 ENSDARG00000037350, ENSDARG00000112384 267.70 2006.83 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
46. rpl36a ENSDARG00000058105, ENSDARG00000112656 266.01 1994.16 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
47. rps23 ENSDARG00000021838 265.73 1992.06 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
48. rps14 ENSDARG00000036629 264.61 1983.66 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
49. rps26l ENSDARG00000030408 260.68 1954.20 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
50. pcna ENSDARG00000054155 257.87 1933.13 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
51. zgc:123194 zgc:123194 254.78 1909.97
52. hnrnpa0a ENSDARG00000089302 244.10 1829.91 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
53. rpl19 ENSDARG00000013307 238.77 1789.95 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
54. eif5a ENSDARG00000017235 230.90 1730.95 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
55. fkbp1aa ENSDARG00000022684 229.50 1720.46 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
56. rps20 ENSDARG00000036044 224.44 1682.52 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
57. ptmaa ENSDARG00000021113, ENSDARG00000110479 220.79 1655.16 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
58. rps19 ENSDARG00000030602 219.10 1642.49 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
59. rpl5b ENSDARG00000015862, ENSDARG00000109661 215.73 1617.23 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
60. AC024175.17 AC024175.17 215.45 1615.13
61. marcksl1b ENSDARG00000035715 212.36 1591.97 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
62. rps2 ENSDARG00000077291 210.40 1577.27 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
63. top1l ENSDARG00000070545 205.34 1539.34 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
64. rps4x ENSDARG00000014690 200.85 1505.68 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
65. rpl27 ENSDARG00000015128 198.32 1486.71 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
66. rps15 ENSDARG00000070849, ENSDARG00000110979 197.47 1480.34 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
67. mt-co1 ENSDARG00000063905 196.63 1474.05 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
68. rplp0 ENSDARG00000051783 195.51 1465.65 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
69. rps27.1 ENSDARG00000023298 194.38 1457.18 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
70. rps9 ENSDARG00000011405, ENSDARG00000113248 193.82 1452.98 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
71. rpl15 ENSDARG00000009285 193.54 1450.88 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
72. rps6 ENSDARG00000019778 187.64 1406.65 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
73. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 185.11 1387.69 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
74. tuba8l ENSDARG00000042708 183.15 1372.99 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
75. marcksb ENSDARG00000008803 182.02 1364.52 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
76. rpl36 ENSDARG00000100588 182.02 1364.52 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
77. rps12 ENSDARG00000036875, ENSDARG00000115157 181.18 1358.22 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
78. marcksl1a ENSDARG00000039034 180.62 1354.03 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
79. ran ENSDARG00000057026 179.78 1347.73 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
80. rplp2 ENSDARG00000101406 175.85 1318.27 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
81. pnrc2 ENSDARG00000053291, ENSDARG00000112537 175.28 1313.99 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
82. TUBA1A ENSDARG00000001889 174.72 1309.80 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
83. rps5 ENSDARG00000043453 174.44 1307.70 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
84. rpl18 ENSDARG00000029533 171.63 1286.63 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. ubc ENSDARG00000102632 171.35 1284.53 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
86. rps15a ENSDARG00000010160 169.67 1271.94 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
87. h3f3d ENSDARG00000045248 167.98 1259.27 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
88. rpl6 ENSDARG00000058451 164.89 1236.11 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
89. nucks1a ENSDARG00000078473 160.96 1206.64 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
90. rplp2l ENSDARG00000011201 160.40 1202.45 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
91. rps10 ENSDARG00000034897 158.43 1187.68 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
92. tubb4b ENSDARG00000002344 155.34 1164.51 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
93. rps24 ENSDARG00000039347 154.50 1158.22 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
94. ddx5 ENSDARG00000038068 154.22 1156.12 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
95. rps3 ENSDARG00000103007 154.22 1156.12 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
96. fabp3 ENSDARG00000023290 153.09 1147.65 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
97. faua ENSDARG00000099022 150.84 1130.78 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
98. gnb2l1 150.28 1126.58 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
99. pbx4 ENSDARG00000052150 149.72 1122.38 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
100. rpl7 ENSDARG00000007320 147.75 1107.61 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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