Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s1.

Sample reads: 133,400. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11663.87 87435.15
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2423.66 18168.33 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. eef2b ENSDARG00000100371, ENSDARG00000109247 1767.25 13247.73 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
4. eef1a1l1 ENSDARG00000020850 1413.80 10598.18 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
5. ppiaa ENSDARG00000009212 1312.82 9841.21 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
6. mt-co2 ENSDARG00000063908 1161.34 8705.68 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. zgc:112425 zgc:112425 1110.84 8327.12
8. hmga1a ENSDARG00000028335 959.37 7191.67 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
9. actb2 ENSDARG00000037870 858.38 6434.62 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. mt-atp6 ENSDARG00000063911 858.38 6434.62 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. ptmab ENSDARG00000101766 807.89 6056.14 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
12. tmsb4x ENSDARG00000077777 807.89 6056.14 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. mt-nd4 ENSDARG00000063917 757.39 5677.58 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. rpl18a ENSDARG00000025073 757.39 5677.58 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
15. eif5a ENSDARG00000017235 656.41 4920.61 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
16. hmgn2 ENSDARG00000099572 555.42 4163.56 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 555.42 4163.56 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. actb1 ENSDARG00000037746, ENSDARG00000113649 504.93 3785.08 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
19. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 504.93 3785.08 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
20. mt-co3 ENSDARG00000063912 504.93 3785.08 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
21. mt-nd2 ENSDARG00000063899 504.93 3785.08 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. tpma ENSDARG00000033683 504.93 3785.08 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
23. pcna ENSDARG00000054155 454.44 3406.59 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
24. rpl9 ENSDARG00000037350, ENSDARG00000112384 454.44 3406.59 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
25. si:dkey-151g10.6 si:dkey-151g10.6 454.44 3406.59
26. btf3 ENSDARG00000035400, ENSDARG00000116462 403.94 3028.03 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
27. cirbp cirbp 403.94 3028.03
28. mt-nd1 ENSDARG00000063895 403.94 3028.03 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. pvalb2 ENSDARG00000002768, ENSDARG00000114085 403.94 3028.03 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
30. rpl23 ENSDARG00000053457 403.94 3028.03 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. rps2 ENSDARG00000077291 403.94 3028.03 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
32. cfl1 ENSDARG00000021124 353.45 2649.55 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
33. hbae3 ENSDARG00000079305 353.45 2649.55 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
34. pabpc1a ENSDARG00000017219 353.45 2649.55 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
35. rpl22 ENSDARG00000070437 353.45 2649.55 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
36. rpl8 ENSDARG00000014867 353.45 2649.55 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
37. rplp0 ENSDARG00000051783 353.45 2649.55 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
38. rplp1 ENSDARG00000021864 353.45 2649.55 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
39. si:dkeyp-86f7.3 si:dkeyp-86f7.3 353.45 2649.55
40. zgc:123194 zgc:123194 353.45 2649.55
41. AL954137.2 ENSDARG00000114408 302.96 2271.06
42. h2afvb ENSDARG00000116491 302.96 2271.06 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
43. h3f3a 302.96 2271.06 H3 histone, family 3A, transcript variant X1
44. hsp90ab1 ENSDARG00000029150 302.96 2271.06 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
45. ptmaa ENSDARG00000021113, ENSDARG00000110479 302.96 2271.06 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
46. rpl10a ENSDARG00000042905, ENSDARG00000115649 302.96 2271.06 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
47. rpsa ENSDARG00000019181 302.96 2271.06 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
48. stmn1b ENSDARG00000033655 302.96 2271.06 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
49. AC024175.17 AC024175.17 252.46 1892.50
50. RPL29 ENSDARG00000077717 252.46 1892.50 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
51. actc1b ENSDARG00000099197 252.46 1892.50 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
52. anp32a ENSDARG00000006487 252.46 1892.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
53. atp5g3b 252.46 1892.50 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
54. cltcb ENSDARG00000090716 252.46 1892.50 clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
55. cyt1l ENSDARG00000036832 252.46 1892.50 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
56. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 252.46 1892.50 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
57. khdrbs1a ENSDARG00000052856 252.46 1892.50 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
58. pbx4 ENSDARG00000052150 252.46 1892.50 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
59. ran ENSDARG00000057026 252.46 1892.50 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
60. rpl11 ENSDARG00000043509 252.46 1892.50 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
61. rpl14 ENSDARG00000103433 252.46 1892.50 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
62. rpl19 ENSDARG00000013307 252.46 1892.50 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
63. rpl28 ENSDARG00000005791 252.46 1892.50 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
64. rpl36 ENSDARG00000100588 252.46 1892.50 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
65. rpl5b ENSDARG00000015862, ENSDARG00000109661 252.46 1892.50 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
66. rpl6 ENSDARG00000058451 252.46 1892.50 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
67. rplp2 ENSDARG00000101406 252.46 1892.50 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
68. rps14 ENSDARG00000036629 252.46 1892.50 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
69. rps3 ENSDARG00000103007 252.46 1892.50 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
70. rps4x ENSDARG00000014690 252.46 1892.50 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
71. tubb4b ENSDARG00000002344 252.46 1892.50 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
72. TUBA1A ENSDARG00000001889 201.97 1514.02 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
73. apoc1l apoc1l 201.97 1514.02
74. atp5a1 201.97 1514.02 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
75. bzw1a ENSDARG00000010481 201.97 1514.02 basic leucine zipper and W2 domains 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3951]
76. calm2a ENSDARG00000031427, ENSDARG00000111871 201.97 1514.02 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
77. ccnd1 ENSDARG00000101637 201.97 1514.02 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
78. celf2 ENSDARG00000002131, ENSDARG00000110267 201.97 1514.02 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
79. ckmb ENSDARG00000040565 201.97 1514.02 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
80. cryba1l1 ENSDARG00000032929 201.97 1514.02 crystallin, beta A1, like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-249]
81. cryba2b ENSDARG00000041925 201.97 1514.02 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324]
82. fkbp1aa ENSDARG00000022684 201.97 1514.02 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
83. fth1a ENSDARG00000015551 201.97 1514.02 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
84. hbbe3 ENSDARG00000038147, ENSDARG00000109344 201.97 1514.02 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
85. hnrnpa0a ENSDARG00000089302 201.97 1514.02 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
86. id1 ENSDARG00000040764 201.97 1514.02 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
87. kifc1 ENSDARG00000001558 201.97 1514.02 kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
88. krt8 ENSDARG00000058358, ENSDARG00000109279 201.97 1514.02 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
89. mt-nd3 ENSDARG00000063914 201.97 1514.02 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
90. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 201.97 1514.02 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
91. rpl23a ENSDARG00000006316 201.97 1514.02 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
92. rpl26 ENSDARG00000102317 201.97 1514.02 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
93. rps12 ENSDARG00000036875, ENSDARG00000115157 201.97 1514.02 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
94. rps18 ENSDARG00000100392 201.97 1514.02 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
95. rps19 ENSDARG00000030602 201.97 1514.02 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
96. rps24 ENSDARG00000039347 201.97 1514.02 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
97. rps26 ENSDARG00000037071 201.97 1514.02 ribosomal protein S26 [Source:ZFIN;Acc:ZDB-GENE-030131-8606]
98. rps26l ENSDARG00000030408 201.97 1514.02 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
99. rps27.1 ENSDARG00000023298 201.97 1514.02 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
100. rps7 ENSDARG00000042566 201.97 1514.02 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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