Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s72.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11756.68 88124.76
2. krt4 ENSDARG00000017624, ENSDARG00000115790 9847.66 73815.28 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 4245.76 31825.02 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. col1a1a ENSDARG00000012405, ENSDARG00000116113 3093.04 23184.56 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
5. and1 ENSDARG00000088514 1716.04 12862.95 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
6. im:7150988 ENSDARG00000109310 1382.22 10360.73 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
7. CABZ01074130.1 ENSDARG00000105274 1257.04 9422.42
8. actb2 ENSDARG00000037870 1230.96 9226.93 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. actb1 ENSDARG00000037746, ENSDARG00000113649 1168.37 8757.77 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
10. mt-co2 ENSDARG00000063908 1053.62 7897.64 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. si:dkey-151g10.6 si:dkey-151g10.6 1032.75 7741.20
12. eef1a1l1 ENSDARG00000020850 897.14 6724.71 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. pfn1 ENSDARG00000088091 881.49 6607.40 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
14. cfl1l ENSDARG00000012972 850.20 6372.86 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
15. zgc:92533 zgc:92533 844.98 6333.73
16. apoc1l apoc1l 808.47 6060.06
17. icn ENSDARG00000009978 798.04 5981.88 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
18. and2 ENSDARG00000079302 771.96 5786.39 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
19. wu:fb17f05 wu:fb17f05 678.07 5082.62
20. zgc:92061 zgc:92061 657.21 4926.26
21. krt8 ENSDARG00000058358, ENSDARG00000109279 594.61 4457.03 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
22. and3 ENSDARG00000056873 589.40 4417.98 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
23. rpl10a ENSDARG00000042905, ENSDARG00000115649 578.97 4339.80 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
24. mt-co3 ENSDARG00000063912 573.75 4300.67 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. ppiaa ENSDARG00000009212 568.54 4261.62 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
26. ptmab ENSDARG00000101766 552.89 4144.31 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
27. icn2 ENSDARG00000055514 542.46 4066.13 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
28. cyt1l ENSDARG00000036832 516.38 3870.64 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
29. apoeb ENSDARG00000040295 490.30 3675.15 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
30. rpl36a ENSDARG00000058105, ENSDARG00000112656 485.08 3636.02 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
31. rpl23 ENSDARG00000053457 469.43 3518.71 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
32. mt-nd2 ENSDARG00000063899 432.92 3245.05 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
33. rps23 ENSDARG00000021838 417.27 3127.74 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
34. mt-atp6 ENSDARG00000063911 412.06 3088.69 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
35. rps27a ENSDARG00000032725, ENSDARG00000114059 412.06 3088.69 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
36. hmga1a ENSDARG00000028335 391.19 2932.25 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
37. rpl21 ENSDARG00000010516, ENSDARG00000110263 385.98 2893.20 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
38. rpl18 ENSDARG00000029533 375.55 2815.02 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
39. krt18 ENSDARG00000018404, ENSDARG00000109528 359.90 2697.71 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
40. rpl8 ENSDARG00000014867 359.90 2697.71 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
41. s100a10b ENSDARG00000025254 359.90 2697.71 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
42. mt-nd4 ENSDARG00000063917 354.68 2658.58 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
43. rpl9 ENSDARG00000037350, ENSDARG00000112384 349.47 2619.53 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
44. rps26l ENSDARG00000030408 349.47 2619.53 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
45. rps9 ENSDARG00000011405, ENSDARG00000113248 349.47 2619.53 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
46. mt-cyb ENSDARG00000063924 344.25 2580.40 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
47. rpl18a ENSDARG00000025073 339.03 2541.27 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
48. rpl35 ENSDARG00000018334 339.03 2541.27 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
49. rpl19 ENSDARG00000013307 333.82 2502.22 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
50. rps15 ENSDARG00000070849, ENSDARG00000110979 323.39 2424.04 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
51. rps5 ENSDARG00000043453 323.39 2424.04 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
52. zgc:112425 zgc:112425 323.39 2424.04
53. rpl11 ENSDARG00000043509 318.17 2384.91 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
54. rpl26 ENSDARG00000102317 318.17 2384.91 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
55. rpl27 ENSDARG00000015128 318.17 2384.91 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
56. rps20 ENSDARG00000036044 307.74 2306.73 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
57. rps27.1 ENSDARG00000023298 302.52 2267.60 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
58. id1 ENSDARG00000040764 297.31 2228.55 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
59. rplp1 ENSDARG00000021864 297.31 2228.55 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. zgc:165571 zgc:165571 297.31 2228.55
61. mt-co1 ENSDARG00000063905 292.09 2189.42 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
62. sparc ENSDARG00000019353 292.09 2189.42 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
63. rpl7 ENSDARG00000007320 286.88 2150.37 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
64. rpl28 ENSDARG00000005791 281.66 2111.24 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
65. btf3 ENSDARG00000035400, ENSDARG00000116462 276.44 2072.12 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
66. rps24 ENSDARG00000039347 276.44 2072.12 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
67. rps12 ENSDARG00000036875, ENSDARG00000115157 271.23 2033.06 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
68. rps29 ENSDARG00000041232 271.23 2033.06 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
69. hspa8 ENSDARG00000068992, ENSDARG00000114726 266.01 1993.94 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
70. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 266.01 1993.94 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
71. rps15a ENSDARG00000010160 260.80 1954.88 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
72. faua ENSDARG00000099022 250.36 1876.63 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
73. rpl36 ENSDARG00000100588 250.36 1876.63 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
74. rplp2 ENSDARG00000101406 250.36 1876.63 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
75. eef2b ENSDARG00000100371, ENSDARG00000109247 234.72 1759.39 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
76. ywhabl ENSDARG00000040287 234.72 1759.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
77. eif5a ENSDARG00000017235 224.28 1681.14 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
78. rpl6 ENSDARG00000058451 224.28 1681.14 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
79. rps3 ENSDARG00000103007 224.28 1681.14 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
80. rps7 ENSDARG00000042566 219.07 1642.09 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
81. bcam ENSDARG00000090190 213.85 1602.96 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
82. si:dkeyp-86f7.3 si:dkeyp-86f7.3 213.85 1602.96
83. ssr2 ENSDARG00000005230 213.85 1602.96 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
84. AL954137.2 ENSDARG00000114408 208.64 1563.91
85. myl12.1 ENSDARG00000099766 208.64 1563.91 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
86. rplp2l ENSDARG00000011201 208.64 1563.91 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
87. serp1 ENSDARG00000099439 208.64 1563.91 stress-associated endoplasmic reticulum protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8741]
88. zgc:153129 zgc:153129 208.64 1563.91
89. fkbp1aa ENSDARG00000022684 203.42 1524.78 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
90. ppiab ENSDARG00000103994 203.42 1524.78 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
91. rpl22 ENSDARG00000070437 203.42 1524.78 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
92. rpl35a ENSDARG00000088030 203.42 1524.78 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
93. ppib ENSDARG00000092798 198.20 1485.65 peptidylprolyl isomerase B (cyclophilin B) [Source:ZFIN;Acc:ZDB-GENE-040426-1955]
94. serpinh1b ENSDARG00000019949 198.20 1485.65 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b [Source:ZFIN;Acc:ZDB-GENE-990415-93]
95. FP067396.1 FP067396.1 192.99 1446.60
96. RPL29 ENSDARG00000077717 192.99 1446.60 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
97. rpl14 ENSDARG00000103433 192.99 1446.60 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
98. rps14 ENSDARG00000036629 192.99 1446.60 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
99. rps2 ENSDARG00000077291 192.99 1446.60 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
100. uba52 ENSDARG00000041435 192.99 1446.60 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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