Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s30.

Sample reads: 133,382. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14467.55 108466.74
2. tpma ENSDARG00000033683 4171.48 31274.60 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3739.70 28037.44 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 3548.51 26604.04 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3526.55 26439.40 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 3235.64 24258.38 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. actc1b ENSDARG00000099197 2118.67 15884.18 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. mylz3 ENSDARG00000017441 1864.36 13977.56 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. atp2a1 ENSDARG00000020574 1627.43 12201.24 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1596.32 11968.00 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
11. acta1b ENSDARG00000055618 1583.52 11872.03 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mt-co2 ENSDARG00000063908 1502.10 11261.61 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1424.34 10678.62 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. mt-atp6 ENSDARG00000063911 1256.02 9416.69 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. tmsb4x ENSDARG00000077777 1076.72 8072.43 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
16. tnni2a.4 ENSDARG00000029069 1059.34 7942.13 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
17. pvalb1 ENSDARG00000037789 824.23 6179.45 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
18. mt-co3 ENSDARG00000063912 766.60 5747.39 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. si:dkey-151g10.6 si:dkey-151g10.6 746.48 5596.54
20. si:ch211-226o13.2 729.09 5466.17 si:ch211-226o13.2
21. mt-nd2 ENSDARG00000063899 727.27 5452.52 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. mt-nd4 ENSDARG00000063917 693.42 5198.74 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
23. actb2 ENSDARG00000037870 685.18 5136.96 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
24. apoc1l apoc1l 677.87 5082.16
25. mylpfb ENSDARG00000002589 671.46 5034.10 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
26. tnnt3b ENSDARG00000068457 660.48 4951.78 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
27. mt-cyb ENSDARG00000063924 640.36 4800.93 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. apoa2 ENSDARG00000015866 614.74 4608.86 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
29. tnnt3a ENSDARG00000030270 603.77 4526.61 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
30. myhz1.2 ENSDARG00000067995 579.98 4348.25 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
31. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 573.58 4300.27 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
32. eef1a1l1 ENSDARG00000020850 548.88 4115.09 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
33. myl1 ENSDARG00000014196 508.63 3813.32 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. apobb apobb 489.42 3669.30
35. apoa1b ENSDARG00000101324 448.25 3360.64 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
36. mt-nd1 ENSDARG00000063895 439.10 3292.04 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
37. ttna ttna 416.23 3120.58
38. actb1 ENSDARG00000037746, ENSDARG00000113649 412.57 3093.14 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. acta1a ENSDARG00000036371 396.11 2969.73 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
40. aldoab ENSDARG00000034470 396.11 2969.73 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
41. nme2b.2 ENSDARG00000099420 386.05 2894.31 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
42. col1a1b ENSDARG00000035809 381.47 2859.97 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
43. apoeb ENSDARG00000040295 376.90 2825.71 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
44. myhz1.3 ENSDARG00000067997 375.07 2811.99 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
45. rpl10a ENSDARG00000042905, ENSDARG00000115649 324.75 2434.73 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
46. hbae3 ENSDARG00000079305 316.52 2373.03 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
47. rpl18a ENSDARG00000025073 306.46 2297.61 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
48. mt-co1 ENSDARG00000063905 288.16 2160.41 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
49. ttnb ttnb 288.16 2160.41
50. zgc:161979_1 zgc:161979_1 288.16 2160.41
51. hmga1a ENSDARG00000028335 282.67 2119.25 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
52. rpl23 ENSDARG00000053457 280.84 2105.53 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
53. hbbe3 ENSDARG00000038147, ENSDARG00000109344 279.93 2098.70 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
54. zgc:112425 zgc:112425 279.01 2091.81
55. gapdh ENSDARG00000043457 274.44 2057.54 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
56. zgc:92533 zgc:92533 273.52 2050.65
57. col1a1a ENSDARG00000012405, ENSDARG00000116113 270.78 2030.10 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
58. rpl8 ENSDARG00000014867 260.72 1954.68 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
59. hspa8 ENSDARG00000068992, ENSDARG00000114726 251.57 1886.08 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
60. ppiaa ENSDARG00000009212 248.83 1865.54 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
61. zgc:66286 zgc:66286 247.91 1858.64
62. rpl36a ENSDARG00000058105, ENSDARG00000112656 243.34 1824.38 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
63. btf3 ENSDARG00000035400, ENSDARG00000116462 238.76 1790.04 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
64. ATP5B 236.93 1776.32 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. rps27a ENSDARG00000032725, ENSDARG00000114059 231.44 1735.16 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
66. pkmb ENSDARG00000099860 229.61 1721.44 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 225.96 1694.08 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. fabp3 ENSDARG00000023290 225.04 1687.18 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
69. rpl9 ENSDARG00000037350, ENSDARG00000112384 222.30 1666.64 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
70. ptmab ENSDARG00000101766 220.47 1652.92 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
71. apoa1a ENSDARG00000012076, ENSDARG00000110395 218.64 1639.20 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
72. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 212.23 1591.14 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
73. col2a1a ENSDARG00000069093, ENSDARG00000111202 211.32 1584.32 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
74. rps2 ENSDARG00000077291 208.57 1563.70 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
75. rpl36 ENSDARG00000100588 199.43 1495.18 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
76. rps20 ENSDARG00000036044 198.51 1488.28 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. rps15 ENSDARG00000070849, ENSDARG00000110979 196.68 1474.56 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
78. si:dkeyp-113d7.4 si:dkeyp-113d7.4 194.85 1460.84
79. rpl11 ENSDARG00000043509 193.94 1454.02 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
80. rps23 ENSDARG00000021838 193.02 1447.12 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
81. rpl26 ENSDARG00000102317 191.19 1433.40 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
82. hbbe1.1 ENSDARG00000113599 189.36 1419.68 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
83. col11a1a ENSDARG00000026165, ENSDARG00000115341 184.79 1385.42 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
84. eif5a ENSDARG00000017235 183.87 1378.52 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
85. apoa4 apoa4 182.04 1364.80
86. myl10 ENSDARG00000062592 182.04 1364.80 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
87. tpm3 ENSDARG00000005162 180.22 1351.15 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
88. rpl19 ENSDARG00000013307 175.64 1316.82 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
89. eef2b ENSDARG00000100371, ENSDARG00000109247 171.98 1289.38 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
90. bhmt ENSDARG00000013430 171.07 1282.55 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
91. rpl6 ENSDARG00000058451 169.24 1268.83 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
92. col1a2 ENSDARG00000020007 167.41 1255.11 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
93. zgc:161979 zgc:161979 163.75 1227.67
94. rplp2 ENSDARG00000101406 160.09 1200.23 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
95. rpl28 ENSDARG00000005791 157.35 1179.69 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
96. icn ENSDARG00000009978 154.60 1159.07 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
97. cfl1l ENSDARG00000012972 153.69 1152.25 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
98. rpl35 ENSDARG00000018334 151.86 1138.53 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
99. rps3 ENSDARG00000103007 151.86 1138.53 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
100. hbae1_1 146.37 1097.37 hemoglobin, alpha embryonic 1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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