Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s12.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5118.63 38368.84
2. tmsb4x ENSDARG00000077777 2119.99 15891.27 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. zgc:112425 zgc:112425 1616.80 12119.40
4. mt-co2 ENSDARG00000063908 1563.93 11723.09 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. si:dkey-151g10.6 si:dkey-151g10.6 1443.62 10821.26
6. ptmab ENSDARG00000101766 1437.39 10774.56 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
7. ppiaa ENSDARG00000009212 1162.92 8717.15 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. krt4 ENSDARG00000017624, ENSDARG00000115790 1105.00 8282.99 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
9. eef1a1l1 ENSDARG00000020850 1087.77 8153.84 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
10. hmga1a ENSDARG00000028335 908.35 6808.92 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
11. actb2 ENSDARG00000037870 904.79 6782.23 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. hmgn2 ENSDARG00000099572 827.26 6201.07 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
13. rpl10a ENSDARG00000042905, ENSDARG00000115649 775.87 5815.86 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
14. hspa8 ENSDARG00000068992, ENSDARG00000114726 696.56 5221.36 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
15. rps23 ENSDARG00000021838 615.17 4611.26 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
16. rpl23 ENSDARG00000053457 600.62 4502.20 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
17. mt-co3 ENSDARG00000063912 577.45 4328.52 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. rpl9 ENSDARG00000037350, ENSDARG00000112384 529.33 3967.81 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
19. hsp90ab1 ENSDARG00000029150 499.03 3740.69 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
20. h3f3a 494.87 3709.51 H3 histone, family 3A, transcript variant X1
21. rps20 ENSDARG00000036044 482.99 3620.45 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
22. eef2b ENSDARG00000100371, ENSDARG00000109247 458.93 3440.10 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
23. si:dkeyp-86f7.3 si:dkeyp-86f7.3 456.85 3424.51
24. id1 ENSDARG00000040764 448.24 3359.97 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
25. rpl36a ENSDARG00000058105, ENSDARG00000112656 446.16 3344.38 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
26. rps15 ENSDARG00000070849, ENSDARG00000110979 435.17 3262.00 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
27. rpl27 ENSDARG00000015128 415.56 3115.00 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
28. AL954137.2 ENSDARG00000114408 412.59 3092.74
29. mt-nd2 ENSDARG00000063899 406.95 3050.46 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
30. rps27a ENSDARG00000032725, ENSDARG00000114059 406.95 3050.46 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
31. hnrnpab hnrnpab 406.06 3043.79
32. rpl36 ENSDARG00000100588 403.38 3023.70 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
33. rpl26 ENSDARG00000102317 392.39 2941.32 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
34. mt-cyb ENSDARG00000063924 386.45 2896.80 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. actb1 ENSDARG00000037746, ENSDARG00000113649 384.97 2885.70 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. rpl21 ENSDARG00000010516, ENSDARG00000110263 377.54 2830.01 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
37. mt-nd4 ENSDARG00000063917 373.38 2798.83 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
38. mt-atp6 ENSDARG00000063911 370.41 2776.56 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
39. rps15a ENSDARG00000010160 364.47 2732.04 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
40. rpl18a ENSDARG00000025073 363.88 2727.62 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
41. h3f3d ENSDARG00000045248 362.69 2718.69 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
42. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 355.26 2663.00 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
43. khdrbs1a ENSDARG00000052856 352.29 2640.74 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
44. rpl19 ENSDARG00000013307 346.05 2593.96 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
45. rpl8 ENSDARG00000014867 342.49 2567.28 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. si:ch1073-429i10.3 333.58 2500.49 si:ch1073-429i10.3, transcript variant X2
47. rpl35 ENSDARG00000018334 330.31 2475.98 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
48. faua ENSDARG00000099022 328.53 2462.63 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
49. cfl1 ENSDARG00000021124 326.15 2444.79 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
50. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 325.26 2438.12 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
51. mt-nd1 ENSDARG00000063895 322.59 2418.11 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
52. rps24 ENSDARG00000039347 322.59 2418.11 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
53. cirbp cirbp 321.99 2413.61
54. rpl11 ENSDARG00000043509 319.91 2398.02 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. rps14 ENSDARG00000036629 319.62 2395.85 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
56. eef1g ENSDARG00000056119 310.71 2329.06 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
57. mt-co1 ENSDARG00000063905 309.22 2317.89 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
58. icn ENSDARG00000009978 294.37 2206.57 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
59. rpl5b ENSDARG00000015862, ENSDARG00000109661 291.10 2182.06 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
60. h2afvb ENSDARG00000116491 287.54 2155.38 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
61. eif5a ENSDARG00000017235 283.67 2126.37 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
62. fkbp1aa ENSDARG00000022684 281.89 2113.02 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
63. rps26l ENSDARG00000030408 275.36 2064.08 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
64. pcna ENSDARG00000054155 268.82 2015.05 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
65. ptmaa ENSDARG00000021113, ENSDARG00000110479 264.96 1986.12 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
66. rpl30 ENSDARG00000035871, ENSDARG00000109253 264.07 1979.45 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
67. rps5 ENSDARG00000043453 260.51 1952.76 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
68. rps7 ENSDARG00000042566 259.32 1943.84 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
69. nucks1a ENSDARG00000078473 258.72 1939.34 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
70. rpl22 ENSDARG00000070437 250.41 1877.05 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
71. rps2 ENSDARG00000077291 248.92 1865.88 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. fabp3 ENSDARG00000023290 247.44 1854.79 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
73. RPL29 ENSDARG00000077717 243.28 1823.61 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
74. marcksb ENSDARG00000008803 242.68 1819.11 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
75. rpl17 ENSDARG00000057556 237.04 1776.83 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
76. rpl7 ENSDARG00000007320 236.15 1770.16 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
77. rpl38 ENSDARG00000006413 235.85 1767.91 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
78. pnrc2 ENSDARG00000053291, ENSDARG00000112537 233.47 1750.07 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
79. rps12 ENSDARG00000036875, ENSDARG00000115157 233.47 1750.07 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
80. rpl14 ENSDARG00000103433 229.32 1718.96 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
81. rps9 ENSDARG00000011405, ENSDARG00000113248 226.05 1694.45 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
82. cfl1l ENSDARG00000012972 225.75 1692.20 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
83. rps27.1 ENSDARG00000023298 219.22 1643.26 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
84. zgc:56493 ENSDARG00000031435 217.43 1629.84 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
85. rpl24 ENSDARG00000099104 217.14 1627.66 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
86. marcksl1b ENSDARG00000035715 215.36 1614.32 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
87. rpl28 ENSDARG00000005791 213.87 1603.15 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
88. rps6 ENSDARG00000019778 210.60 1578.64 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
89. rplp2l ENSDARG00000011201 208.52 1563.05 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
90. rpl39 ENSDARG00000036316, ENSDARG00000117167 207.04 1551.96 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
91. rps18 ENSDARG00000100392 207.04 1551.96 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
92. hnrnpa0a ENSDARG00000089302 206.74 1549.71 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
93. rps3 ENSDARG00000103007 204.07 1529.69 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
94. rps29 ENSDARG00000041232 203.18 1523.02 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
95. ywhabl ENSDARG00000040287 201.69 1511.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
96. btf3 ENSDARG00000035400, ENSDARG00000116462 200.21 1500.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
97. krt18 ENSDARG00000018404, ENSDARG00000109528 196.34 1471.75 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
98. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 191.29 1433.89 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
99. rpl23a ENSDARG00000006316 188.62 1413.88 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
100. marcksl1a ENSDARG00000039034 187.43 1404.96 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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