Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s1.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17235.20 129198.79
2. mt-co2 ENSDARG00000063908 2142.23 16058.62 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
3. hmga1a ENSDARG00000028335 1363.24 10219.14 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
4. hmgn2 ENSDARG00000099572 1265.86 9489.16 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
5. ppiaa ENSDARG00000009212 1265.86 9489.16 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
6. eef2b ENSDARG00000100371, ENSDARG00000109247 1071.11 8029.27 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
7. mt-co3 ENSDARG00000063912 1071.11 8029.27 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. actb2 ENSDARG00000037870 973.74 7299.37 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. eef1a1l1 ENSDARG00000020850 973.74 7299.37 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
10. AL954137.2 ENSDARG00000114408 876.37 6569.46
11. krt4 ENSDARG00000017624, ENSDARG00000115790 876.37 6569.46 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
12. mt-atp6 ENSDARG00000063911 876.37 6569.46 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. ptmab ENSDARG00000101766 778.99 5839.48 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
14. si:dkey-151g10.6 si:dkey-151g10.6 778.99 5839.48
15. cirbp cirbp 681.62 5109.57
16. rpl9 ENSDARG00000037350, ENSDARG00000112384 681.62 5109.57 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
17. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 681.62 5109.57 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
18. zgc:112425 zgc:112425 681.62 5109.57
19. cox7a3 584.24 4379.59 cytochrome c oxidase subunit VIIa polypeptide 3
20. eif5a ENSDARG00000017235 584.24 4379.59 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
21. hnrnpab hnrnpab 584.24 4379.59
22. rpl10a ENSDARG00000042905, ENSDARG00000115649 584.24 4379.59 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
23. seta ENSDARG00000031495 584.24 4379.59 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
24. tmsb4x ENSDARG00000077777 584.24 4379.59 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
25. tuba8l ENSDARG00000042708 584.24 4379.59 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
26. actb1 ENSDARG00000037746, ENSDARG00000113649 486.87 3649.68 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
27. khdrbs1a ENSDARG00000052856 486.87 3649.68 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
28. mt-nd1 ENSDARG00000063895 486.87 3649.68 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. mt-nd2 ENSDARG00000063899 486.87 3649.68 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
30. rab2a ENSDARG00000020261 486.87 3649.68 RAB2A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-011212-2]
31. TUBA1A ENSDARG00000001889 389.50 2919.78 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
32. aldoaa ENSDARG00000011665 389.50 2919.78 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
33. atp6ap2 ENSDARG00000008735 389.50 2919.78 ATPase H+ transporting accessory protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1960]
34. atp6v0ca ENSDARG00000057853 389.50 2919.78 ATPase H+ transporting V0 subunit ca [Source:ZFIN;Acc:ZDB-GENE-020419-23]
35. cetn3 ENSDARG00000011825 389.50 2919.78 centrin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-152]
36. elavl1 389.50 2919.78 ELAV like RNA binding protein 1, transcript variant X3
37. marcksb ENSDARG00000008803 389.50 2919.78 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
38. mt-nd4 ENSDARG00000063917 389.50 2919.78 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
39. rpl26 ENSDARG00000102317 389.50 2919.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
40. rplp2 ENSDARG00000101406 389.50 2919.78 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
41. rps10 ENSDARG00000034897 389.50 2919.78 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
42. rps24 ENSDARG00000039347 389.50 2919.78 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
43. rps25 ENSDARG00000041811 389.50 2919.78 ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
44. rps26l ENSDARG00000030408 389.50 2919.78 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
45. rps27.1 ENSDARG00000023298 389.50 2919.78 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
46. tuba8l4 ENSDARG00000006260 389.50 2919.78 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
47. ywhaba ENSDARG00000013078 389.50 2919.78 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-6583]
48. zgc:165571 zgc:165571 389.50 2919.78
49. BX511086.1 BX511086.1 292.12 2189.79
50. NAT16 ENSDARG00000086222 292.12 2189.79 N-acetyltransferase 16 [Source:ZFIN;Acc:ZDB-GENE-030219-43]
51. apoa2 ENSDARG00000015866 292.12 2189.79 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
52. bckdha ENSDARG00000040555, ENSDARG00000111762 292.12 2189.79 branched chain keto acid dehydrogenase E1, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-050522-376]
53. btf3 ENSDARG00000035400, ENSDARG00000116462 292.12 2189.79 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. cbx5 ENSDARG00000061187 292.12 2189.79 chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]
55. fabp7a ENSDARG00000007697 292.12 2189.79 fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
56. faua ENSDARG00000099022 292.12 2189.79 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
57. h3f3b.1_1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 292.12 2189.79 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
58. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 292.12 2189.79 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
59. hsp90ab1 ENSDARG00000029150 292.12 2189.79 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
60. hspa8 ENSDARG00000068992, ENSDARG00000114726 292.12 2189.79 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
61. khsrp ENSDARG00000026489 292.12 2189.79 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
62. kidins220b ENSDARG00000017338 292.12 2189.79 kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
63. mt-co1 ENSDARG00000063905 292.12 2189.79 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
64. mt-cyb ENSDARG00000063924 292.12 2189.79 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
65. pnrc2 ENSDARG00000053291, ENSDARG00000112537 292.12 2189.79 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
66. rpl18 ENSDARG00000029533 292.12 2189.79 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
67. rpl19 ENSDARG00000013307 292.12 2189.79 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
68. rpl22 ENSDARG00000070437 292.12 2189.79 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
69. rpl23 ENSDARG00000053457 292.12 2189.79 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
70. rpl31 ENSDARG00000053365 292.12 2189.79 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
71. rpl35 ENSDARG00000018334 292.12 2189.79 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
72. rplp0 ENSDARG00000051783 292.12 2189.79 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
73. rplp2l ENSDARG00000011201 292.12 2189.79 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
74. rps14 ENSDARG00000036629 292.12 2189.79 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
75. rps19 ENSDARG00000030602 292.12 2189.79 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
76. rps20 ENSDARG00000036044 292.12 2189.79 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. rps23 ENSDARG00000021838 292.12 2189.79 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
78. rpsa ENSDARG00000019181 292.12 2189.79 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
79. slc29a4 ENSDARG00000059690 292.12 2189.79 solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-1932]
80. sparc ENSDARG00000019353 292.12 2189.79 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
81. stmn1b ENSDARG00000033655 292.12 2189.79 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
82. sumo2b ENSDARG00000102741 292.12 2189.79 small ubiquitin-like modifier 2b [Source:ZFIN;Acc:ZDB-GENE-040801-7]
83. tmpob ENSDARG00000022978 292.12 2189.79 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
84. zgc:110339 ENSDARG00000046030 292.12 2189.79 zgc:110339 [Source:ZFIN;Acc:ZDB-GENE-050417-323]
85. zgc:153867 292.12 2189.79 zgc:153867, transcript variant X2
86. zgc:158409 zgc:158409 292.12 2189.79
87. AC024175.17 AC024175.17 194.75 1459.89
88. ATP5B 194.75 1459.89 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
89. C21H5orf15 C21H5orf15 194.75 1459.89
90. CABZ01007794.1 CABZ01007794.1 194.75 1459.89
91. CASKIN2_1 CASKIN2_1 194.75 1459.89
92. CREBZF ENSDARG00000089787 194.75 1459.89 CREB/ATF bZIP transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-8015]
93. CYTH2 ENSDARG00000028800 194.75 1459.89 cytohesin 2 [Source:HGNC Symbol;Acc:HGNC:9502]
94. ENDOD1_5 ENDOD1_5 194.75 1459.89
95. HNRNPAB HNRNPAB 194.75 1459.89
96. IDH2 ENSDARG00000003795 194.75 1459.89 isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
97. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 194.75 1459.89 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
98. NUMA1_2 NUMA1_2 194.75 1459.89
99. RNF5 ENSDARG00000075606 194.75 1459.89 ring finger protein 5 [Source:HGNC Symbol;Acc:HGNC:10068]
100. UBC ENSDARG00000102632 194.75 1459.89 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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