Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s8.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12193.85 91411.65
2. tpma ENSDARG00000033683 6164.40 46211.65 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 4268.28 31997.32 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. ckma ENSDARG00000035327, ENSDARG00000114671 3918.01 29371.51 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3134.65 23499.02 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. atp2a1 ENSDARG00000020574 2540.23 19042.93 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
7. mylz3 ENSDARG00000017441 2526.74 18941.80 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2297.93 17226.52 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
9. mt-atp6 ENSDARG00000063911 2088.74 15658.32 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. acta1b ENSDARG00000055618 1958.08 14678.82 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. mt-nd2 ENSDARG00000063899 1835.40 13759.14 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. krt4 ENSDARG00000017624, ENSDARG00000115790 1782.64 13363.63 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1768.53 13257.85 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. actc1b ENSDARG00000099197 1526.23 11441.44 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. mt-co2 ENSDARG00000063908 1518.86 11386.19 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
16. mt-nd4 ENSDARG00000063917 1467.34 10999.97 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. myhz1.3 ENSDARG00000067997 1395.56 10461.87 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
18. pvalb1 ENSDARG00000037789 1341.58 10057.20 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
19. mt-co3 ENSDARG00000063912 1336.06 10015.82 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. tnnt3a ENSDARG00000030270 1028.73 7711.91 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
21. mt-nd1 ENSDARG00000063895 974.13 7302.60 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
22. mylpfb ENSDARG00000002589 923.22 6920.95 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
23. eef1a1l1 ENSDARG00000020850 913.40 6847.34 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. mt-cyb ENSDARG00000063924 900.52 6750.78 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. tnnt3b ENSDARG00000068457 879.67 6594.48 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
26. acta1a ENSDARG00000036371 877.82 6580.61 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. tnni2a.4 ENSDARG00000029069 734.89 5509.13 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
28. myl1 ENSDARG00000014196 715.88 5366.62 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
29. si:ch211-226o13.2 622.02 4663.00 si:ch211-226o13.2
30. aldoab ENSDARG00000034470 619.57 4644.63 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 496.88 3724.88 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. si:dkey-151g10.6 si:dkey-151g10.6 491.36 3683.50
33. actb2 ENSDARG00000037870 482.77 3619.10 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
34. gapdh ENSDARG00000043457 461.92 3462.80 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
35. zgc:66286 zgc:66286 461.92 3462.80
36. tmsb4x ENSDARG00000077777 430.02 3223.66 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
37. myhz2 ENSDARG00000012944 426.34 3196.07 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
38. ppiaa ENSDARG00000009212 416.52 3122.46 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
39. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 393.82 2952.29 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
40. mt-co1 ENSDARG00000063905 374.20 2805.20 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
41. rpl8 ENSDARG00000014867 366.83 2749.95 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
42. rpl23 ENSDARG00000053457 364.38 2731.59 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 360.70 2704.00 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. hbae3 ENSDARG00000079305 351.50 2635.03 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
45. ttna ttna 348.43 2612.02
46. nme2b.2 ENSDARG00000099420 347.82 2607.45 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
47. myl10 ENSDARG00000062592 346.59 2598.22 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
48. rpl36a ENSDARG00000058105, ENSDARG00000112656 314.69 2359.09 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
49. rplp1 ENSDARG00000021864 314.08 2354.51 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
50. actb1 ENSDARG00000037746, ENSDARG00000113649 309.17 2317.70 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
51. rpl26 ENSDARG00000102317 304.26 2280.90 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. col1a1a ENSDARG00000012405, ENSDARG00000116113 288.93 2165.97 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
53. eif5a ENSDARG00000017235 284.63 2133.74 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. tpm3 ENSDARG00000005162 284.02 2129.17 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
55. ttnb ttnb 283.41 2124.59
56. pkmb ENSDARG00000099860 274.21 2055.63 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
57. rps27a ENSDARG00000032725, ENSDARG00000114059 270.52 2027.96 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
58. rpl18a ENSDARG00000025073 269.91 2023.39 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
59. ak1 ENSDARG00000001950 267.46 2005.02 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
60. rpl21 ENSDARG00000010516, ENSDARG00000110263 267.46 2005.02 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
61. col1a1b ENSDARG00000035809 265.00 1986.58 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
62. mt-nd3 ENSDARG00000063914 264.39 1982.01 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
63. rps26l ENSDARG00000030408 263.78 1977.44 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
64. tmem38a ENSDARG00000024047 261.32 1959.00 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
65. hspa8 ENSDARG00000068992, ENSDARG00000114726 260.10 1949.85 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
66. col2a1a ENSDARG00000069093, ENSDARG00000111202 258.26 1936.06 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
67. rps23 ENSDARG00000021838 255.80 1917.61 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
68. ATP5B 254.58 1908.47 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
69. rpl19 ENSDARG00000013307 253.96 1903.82 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
70. rpl11 ENSDARG00000043509 250.28 1876.23 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. rps14 ENSDARG00000036629 247.21 1853.22 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
72. rps2 ENSDARG00000077291 245.99 1844.07 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
73. rpl9 ENSDARG00000037350, ENSDARG00000112384 242.31 1816.49 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
74. pvalb4 ENSDARG00000024433 238.01 1784.25 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
75. rpl27 ENSDARG00000015128 235.56 1765.88 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
76. eef2b ENSDARG00000100371, ENSDARG00000109247 231.26 1733.65 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
77. rpl7 ENSDARG00000007320 228.81 1715.28 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
78. fabp3 ENSDARG00000023290 220.22 1650.89 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
79. col9a1 col9a1 219.61 1646.31
80. ldb3b ENSDARG00000099974 218.38 1637.09 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
81. rpsa ENSDARG00000019181 217.16 1627.95 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. hbbe1.1 ENSDARG00000113599 214.70 1609.51 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
83. tnni2b.1 ENSDARG00000035958 213.48 1600.36 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
84. hmga1a ENSDARG00000028335 212.86 1595.71 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
85. actn3a ENSDARG00000013755, ENSDARG00000111128 210.41 1577.35 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
86. rps6 ENSDARG00000019778 208.57 1563.55 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
87. atp5g3b 206.73 1549.76 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
88. hbbe3 ENSDARG00000038147, ENSDARG00000109344 203.66 1526.74 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
89. rplp2 ENSDARG00000101406 199.37 1494.58 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
90. slc25a4 ENSDARG00000027355, ENSDARG00000112318 199.37 1494.58 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
91. rps15 ENSDARG00000070849, ENSDARG00000110979 198.75 1489.94 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
92. rplp0 ENSDARG00000051783 190.16 1425.54 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
93. rps9 ENSDARG00000011405, ENSDARG00000113248 190.16 1425.54 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
94. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 190.16 1425.54 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
95. rps5 ENSDARG00000043453 188.32 1411.75 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
96. rps20 ENSDARG00000036044 187.10 1402.60 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
97. hbae1_1 184.03 1379.59 hemoglobin, alpha embryonic 1
98. rpl6 ENSDARG00000058451 184.03 1379.59 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
99. rps3 ENSDARG00000103007 181.58 1361.22 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
100. rps27.1 ENSDARG00000023298 180.35 1352.00 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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