Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s7.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11424.20 85636.45
2. tpma ENSDARG00000033683 5852.15 43868.05 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 4573.95 34286.59 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. ckma ENSDARG00000035327, ENSDARG00000114671 3858.02 28919.94 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2761.29 20698.79 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. mylz3 ENSDARG00000017441 2576.89 19316.51 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. atp2a1 ENSDARG00000020574 2546.45 19088.33 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
8. krt4 ENSDARG00000017624, ENSDARG00000115790 2373.17 17789.42 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
9. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2209.85 16565.16 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
10. mt-atp6 ENSDARG00000063911 2175.31 16306.25 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. mt-nd2 ENSDARG00000063899 1972.77 14788.00 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. mt-co2 ENSDARG00000063908 1942.62 14561.99 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1714.90 12854.99 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. actc1b ENSDARG00000099197 1705.54 12784.82 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. acta1b ENSDARG00000055618 1449.14 10862.84 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
16. myhz1.3 ENSDARG00000067997 1437.43 10775.06 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
17. mt-co3 ENSDARG00000063912 1433.62 10746.50 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. mt-nd4 ENSDARG00000063917 1371.86 10283.54 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. mt-nd1 ENSDARG00000063895 1055.75 7913.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. pvalb1 ENSDARG00000037789 1050.78 7876.71 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
21. mt-cyb ENSDARG00000063924 961.21 7205.28 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. tnni2a.4 ENSDARG00000029069 938.09 7031.98 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. tnnt3a ENSDARG00000030270 900.62 6751.10 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. tnnt3b ENSDARG00000068457 862.28 6463.70 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
25. myl1 ENSDARG00000014196 842.96 6318.88 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
26. eef1a1l1 ENSDARG00000020850 842.38 6314.53 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. acta1a ENSDARG00000036371 817.50 6128.03 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. mylpfb ENSDARG00000002589 755.45 5662.90 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
29. si:dkey-151g10.6 si:dkey-151g10.6 731.15 5480.74
30. col2a1a ENSDARG00000069093, ENSDARG00000111202 715.64 5364.48 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
31. si:ch211-226o13.2 708.62 5311.86 si:ch211-226o13.2
32. col9a1 col9a1 583.34 4372.75
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 538.27 4034.90 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. aldoab ENSDARG00000034470 532.12 3988.80 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
35. zgc:66286 zgc:66286 519.83 3896.67
36. myhz2 ENSDARG00000012944 499.05 3740.91 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
37. actb2 ENSDARG00000037870 438.46 3286.72 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
38. ttna ttna 438.17 3284.55
39. gapdh ENSDARG00000043457 437.29 3277.95 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
40. mt-co1 ENSDARG00000063905 432.31 3240.62 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
41. col11a1a ENSDARG00000026165, ENSDARG00000115341 430.85 3229.68 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
42. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 421.19 3157.26 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
43. tmsb4x ENSDARG00000077777 412.99 3095.80 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
44. rpl23 ENSDARG00000053457 403.92 3027.81 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. nme2b.2 ENSDARG00000099420 390.16 2924.66 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
46. myl10 ENSDARG00000062592 384.89 2885.16 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
47. ppiaa ENSDARG00000009212 368.80 2764.55 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
48. btf3 ENSDARG00000035400, ENSDARG00000116462 355.92 2668.00 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. rpl18a ENSDARG00000025073 340.11 2549.48 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
50. tpm3 ENSDARG00000005162 334.55 2507.81 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
51. rpl8 ENSDARG00000014867 328.11 2459.53 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. col9a2 ENSDARG00000024492 325.77 2441.99 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
53. col1a1b ENSDARG00000035809 310.84 2330.07 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
54. actb1 ENSDARG00000037746, ENSDARG00000113649 310.55 2327.90 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
55. col1a1a ENSDARG00000012405, ENSDARG00000116113 307.62 2305.94 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
56. pkmb ENSDARG00000099860 300.01 2248.89 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
57. ttnb ttnb 296.50 2222.58
58. rps23 ENSDARG00000021838 290.94 2180.90 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. rpl26 ENSDARG00000102317 281.57 2110.66 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
60. rpl9 ENSDARG00000037350, ENSDARG00000112384 276.01 2068.99 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
61. rpl36a ENSDARG00000058105, ENSDARG00000112656 274.55 2058.04 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
62. eif5a ENSDARG00000017235 273.38 2049.27 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
63. rps27a ENSDARG00000032725, ENSDARG00000114059 272.21 2040.50 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
64. rpl21 ENSDARG00000010516, ENSDARG00000110263 270.16 2025.13 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
65. pvalb4 ENSDARG00000024433 268.99 2016.36 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
66. fabp3 ENSDARG00000023290 259.91 1948.30 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
67. rpl27 ENSDARG00000015128 259.91 1948.30 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
68. rps2 ENSDARG00000077291 256.99 1926.41 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
69. rplp1 ENSDARG00000021864 256.11 1919.81 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
70. rpl11 ENSDARG00000043509 255.23 1913.22 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. ATP5B 253.47 1900.03 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
72. mt-nd3 ENSDARG00000063914 251.43 1884.73 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
73. ak1 ENSDARG00000001950 247.91 1858.35 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
74. hspa8 ENSDARG00000068992, ENSDARG00000114726 247.33 1854.00 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
75. rps20 ENSDARG00000036044 235.62 1766.22 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
76. eef2b ENSDARG00000100371, ENSDARG00000109247 233.28 1748.68 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
77. rps14 ENSDARG00000036629 230.06 1724.54 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
78. tmem38a ENSDARG00000024047 230.06 1724.54 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
79. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 224.20 1680.62 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
80. rpl36 ENSDARG00000100588 217.18 1627.99 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
81. ldb3b ENSDARG00000099974 208.98 1566.53 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
82. rps26l ENSDARG00000030408 208.40 1562.18 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
83. rpl19 ENSDARG00000013307 207.52 1555.58 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
84. rps9 ENSDARG00000011405, ENSDARG00000113248 199.33 1494.19 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
85. rpl7 ENSDARG00000007320 196.69 1474.40 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
86. krt18 ENSDARG00000018404, ENSDARG00000109528 196.40 1472.23 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
87. rplp2 ENSDARG00000101406 195.81 1467.80 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
88. rps15 ENSDARG00000070849, ENSDARG00000110979 194.35 1456.86 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
89. actn3a ENSDARG00000013755, ENSDARG00000111128 191.42 1434.90 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
90. rps6 ENSDARG00000019778 190.54 1428.30 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
91. rps3 ENSDARG00000103007 189.67 1421.78 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
92. rpl18 ENSDARG00000029533 187.62 1406.41 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
93. tnni2b.1 ENSDARG00000035958 186.15 1395.39 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
94. rps12 ENSDARG00000036875, ENSDARG00000115157 182.64 1369.08 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
95. atp5g3b 179.13 1342.77 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
96. atp5g1 176.79 1325.23 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
97. rpl5b ENSDARG00000015862, ENSDARG00000109661 175.91 1318.63 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
98. rpsa ENSDARG00000019181 174.45 1307.69 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
99. RPL29 ENSDARG00000077717 173.86 1303.26 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
100. rpl6 ENSDARG00000058451 172.69 1294.49 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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