Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s3.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12526.32 93903.12
2. tpma ENSDARG00000033683 4289.66 32157.29 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 3775.66 28304.10 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. ckma ENSDARG00000035327, ENSDARG00000114671 3633.16 27235.86 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. atp2a1 ENSDARG00000020574 2594.54 19449.88 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
6. actc1b ENSDARG00000099197 2165.71 16235.17 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1971.18 14776.88 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. mylz3 ENSDARG00000017441 1854.19 13899.87 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. mt-atp6 ENSDARG00000063911 1787.25 13398.06 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. krt4 ENSDARG00000017624, ENSDARG00000115790 1737.21 13022.93 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1648.39 12357.10 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. mt-nd2 ENSDARG00000063899 1622.87 12165.79 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-co2 ENSDARG00000063908 1590.73 11924.85 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. acta1b ENSDARG00000055618 1381.61 10357.19 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
15. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1369.68 10267.76 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
16. mt-co3 ENSDARG00000063912 1202.66 9015.70 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. mt-nd4 ENSDARG00000063917 1074.74 8056.75 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. eef1a1l1 ENSDARG00000020850 1026.02 7691.52 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
19. myhz1.3 ENSDARG00000067997 994.54 7455.53 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
20. mt-nd1 ENSDARG00000063895 870.26 6523.87 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
21. pvalb1 ENSDARG00000037789 822.21 6163.67 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
22. mt-cyb ENSDARG00000063924 802.65 6017.04 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. tnni2a.4 ENSDARG00000029069 783.76 5875.43 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. myl1 ENSDARG00000014196 763.88 5726.40 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
25. tnnt3a ENSDARG00000030270 716.49 5371.14 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. si:dkey-151g10.6 si:dkey-151g10.6 610.44 4576.14
27. tnnt3b ENSDARG00000068457 595.86 4466.84 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
28. acta1a ENSDARG00000036371 570.01 4273.06 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. mylpfb ENSDARG00000002589 569.68 4270.59 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
30. si:ch211-226o13.2 536.87 4024.63 si:ch211-226o13.2
31. actb2 ENSDARG00000037870 534.22 4004.76 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
32. myhz2 ENSDARG00000012944 448.39 3361.34 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 436.12 3269.36 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. rpl23 ENSDARG00000053457 435.79 3266.88 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
35. ppiaa ENSDARG00000009212 433.47 3249.49 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
36. aldoab ENSDARG00000034470 428.17 3209.76 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
37. zgc:66286 zgc:66286 425.19 3187.42
38. gapdh ENSDARG00000043457 421.21 3157.59 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
39. hmga1a ENSDARG00000028335 408.95 3065.68 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
40. mt-co1 ENSDARG00000063905 404.64 3033.37 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
41. col2a1a ENSDARG00000069093, ENSDARG00000111202 372.83 2794.91 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
42. ttna ttna 371.50 2784.94
43. col1a1b ENSDARG00000035809 362.22 2715.37 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
44. zgc:112425 zgc:112425 359.57 2695.50
45. rpl8 ENSDARG00000014867 335.38 2514.16 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. tmsb4x ENSDARG00000077777 333.06 2496.77 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
47. eef2b ENSDARG00000100371, ENSDARG00000109247 332.73 2494.30 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
48. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 324.77 2434.63 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
49. col1a1a ENSDARG00000012405, ENSDARG00000116113 317.81 2382.45 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
50. btf3 ENSDARG00000035400, ENSDARG00000116462 316.49 2372.56 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
51. fabp3 ENSDARG00000023290 312.18 2340.25 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
52. tpm3 ENSDARG00000005162 309.53 2320.38 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
53. rpl18a ENSDARG00000025073 308.87 2315.43 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
54. eif5a ENSDARG00000017235 303.23 2273.15 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
55. actb1 ENSDARG00000037746, ENSDARG00000113649 297.27 2228.47 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
56. rps23 ENSDARG00000021838 292.30 2191.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
57. ATP5B 285.67 2141.52 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
58. col9a1 col9a1 278.38 2086.87
59. rpl26 ENSDARG00000102317 276.72 2074.42 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
60. nme2b.2 ENSDARG00000099420 275.39 2064.45 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
61. myl10 ENSDARG00000062592 270.09 2024.72 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
62. hspa8 ENSDARG00000068992, ENSDARG00000114726 269.43 2019.77 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
63. rpl21 ENSDARG00000010516, ENSDARG00000110263 269.10 2017.30 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
64. rpl9 ENSDARG00000037350, ENSDARG00000112384 261.14 1957.63 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
65. rplp1 ENSDARG00000021864 251.20 1883.11 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
66. rps2 ENSDARG00000077291 250.54 1878.16 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. ttnb ttnb 248.88 1865.72
68. pkmb ENSDARG00000099860 248.22 1860.77 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
69. rps27a ENSDARG00000032725, ENSDARG00000114059 247.23 1853.35 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
70. rpl36a ENSDARG00000058105, ENSDARG00000112656 241.26 1808.60 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
71. pvalb4 ENSDARG00000024433 234.63 1758.90 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
72. ptmab ENSDARG00000101766 232.31 1741.50 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
73. rpl11 ENSDARG00000043509 231.65 1736.56 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
74. rpl27 ENSDARG00000015128 226.02 1694.35 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
75. hmgn2 ENSDARG00000099572 218.73 1639.70 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
76. rps14 ENSDARG00000036629 217.73 1632.21 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
77. AL954137.2 ENSDARG00000114408 207.79 1557.69
78. rpl19 ENSDARG00000013307 204.47 1532.80 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
79. rpl36 ENSDARG00000100588 201.16 1507.99 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
80. col11a1a ENSDARG00000026165, ENSDARG00000115341 198.51 1488.12 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
81. rps20 ENSDARG00000036044 197.85 1483.18 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
82. ak1 ENSDARG00000001950 195.53 1465.78 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
83. ldb3b ENSDARG00000099974 193.54 1450.87 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
84. rps15 ENSDARG00000070849, ENSDARG00000110979 193.21 1448.39 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
85. rps12 ENSDARG00000036875, ENSDARG00000115157 188.57 1413.61 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
86. gch2 ENSDARG00000099101 187.57 1406.11 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
87. rps27.1 ENSDARG00000023298 186.25 1396.22 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
88. rps3 ENSDARG00000103007 185.25 1388.72 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
89. rplp2 ENSDARG00000101406 184.92 1386.25 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
90. rpl7 ENSDARG00000007320 184.59 1383.77 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
91. rplp0 ENSDARG00000051783 184.26 1381.30 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
92. mt-nd3 ENSDARG00000063914 183.60 1376.35 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
93. rps9 ENSDARG00000011405, ENSDARG00000113248 182.93 1371.33 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
94. RPL29 ENSDARG00000077717 180.95 1356.49 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
95. rps19 ENSDARG00000030602 175.97 1319.15 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
96. rpl35 ENSDARG00000018334 172.00 1289.39 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
97. fkbp1aa ENSDARG00000022684 171.67 1286.92 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
98. rplp2l ENSDARG00000011201 171.33 1284.37 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
99. tmem38a ENSDARG00000024047 171.33 1284.37 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
100. rps26l ENSDARG00000030408 171.00 1281.90 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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